Detailed information NTG0095649

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: LGMS210922A_RS09445
• Genome accession: NZ_AP026069
• Coordinates: 1923372..1923866 (-)
• Length: 164 a.a.
• NCBI ID: WP_003133131.1
• Uniprot ID: A0A1I4HNK8
• Organism: Lactococcus garvieae strain MS210922A
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1918372..1928866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGMS210922A_RS09410 (LGMS210922A_18470)	recX	1918699..1919532 (+)	834	WP_265149790.1	recombination regulator RecX	-
LGMS210922A_RS09415 (LGMS210922A_18480)	-	1919615..1920463 (+)	849	WP_265149791.1	MurR/RpiR family transcriptional regulator	-
LGMS210922A_RS09420 (LGMS210922A_18490)	-	1920495..1920803 (+)	309	WP_014025499.1	DUF960 domain-containing protein	-
LGMS210922A_RS09425 (LGMS210922A_18500)	-	1920837..1921604 (-)	768	WP_265149792.1	metallophosphoesterase	-
LGMS210922A_RS09430 (LGMS210922A_18510)	-	1921689..1921970 (-)	282	WP_265149793.1	hypothetical protein	-
LGMS210922A_RS09435 (LGMS210922A_18520)	-	1922033..1922896 (-)	864	WP_265149794.1	hypothetical protein	-
LGMS210922A_RS09440 (LGMS210922A_18530)	rpsR	1923013..1923258 (-)	246	WP_003133134.1	30S ribosomal protein S18	-
LGMS210922A_RS09445 (LGMS210922A_18540)	ssb	1923372..1923866 (-)	495	WP_003133131.1	single-stranded DNA-binding protein	Machinery gene
LGMS210922A_RS09450 (LGMS210922A_18550)	rpsF	1923904..1924197 (-)	294	WP_003133129.1	30S ribosomal protein S6	-
LGMS210922A_RS09455 (LGMS210922A_18560)	-	1924384..1924596 (-)	213	WP_016171080.1	hypothetical protein	-
LGMS210922A_RS09460 (LGMS210922A_18570)	-	1925067..1926530 (+)	1464	WP_003133128.1	amino acid permease	-
LGMS210922A_RS09465 (LGMS210922A_18580)	dnaX	1926563..1928221 (-)	1659	WP_265149797.1	DNA polymerase III subunit gamma/tau	-
LGMS210922A_RS09470 (LGMS210922A_18590)	-	1928234..1928854 (-)	621	WP_265149799.1	phosphotransferase	-

Sequence

Protein

• Length: 164 a.a.
• Molecular weight: 18003.88 Da
• Isoelectric Point: 4.9533

>NTDB_id=95649 LGMS210922A_RS09445 WP_003133131.1 1923372..1923866(-) (ssb) [Lactococcus garvieae strain MS210922A]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNATPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide

• Length: 495 bp

>NTDB_id=95649 LGMS210922A_RS09445 WP_003133131.1 1923372..1923866(-) (ssb) [Lactococcus garvieae strain MS210922A]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATATACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAGAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATGCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A1I4HNK8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	57.31	100	0.598
ssbA	Bacillus subtilis subsp. subtilis str. 168	53.933	100	0.585
ssbB/cilA	Streptococcus pneumoniae TIGR4	49.242	80.488	0.396
ssbB/cilA	Streptococcus pneumoniae D39	48.485	80.488	0.39
ssbB/cilA	Streptococcus pneumoniae R6	48.485	80.488	0.39
ssbB/cilA	Streptococcus mitis SK321	48.485	80.488	0.39
ssbB/cilA	Streptococcus mitis NCTC 12261	48.485	80.488	0.39
ssbB/cilA	Streptococcus pneumoniae Rx1	48.485	80.488	0.39
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.547	64.634	0.372