Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LGMS210922A_RS09360 Genome accession   NZ_AP026069
Coordinates   1908505..1909548 (-) Length   347 a.a.
NCBI ID   WP_265149785.1    Uniprot ID   -
Organism   Lactococcus garvieae strain MS210922A     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1903505..1914548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMS210922A_RS09345 (LGMS210922A_18340) rpsB 1903540..1904313 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  LGMS210922A_RS09350 (LGMS210922A_18350) - 1904586..1905626 (+) 1041 WP_074751412.1 lactonase family protein -
  LGMS210922A_RS09355 (LGMS210922A_18360) adhE 1905781..1908474 (+) 2694 WP_265149784.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  LGMS210922A_RS09360 (LGMS210922A_18370) sepM 1908505..1909548 (-) 1044 WP_265149785.1 SepM family pheromone-processing serine protease Regulator
  LGMS210922A_RS09365 (LGMS210922A_18380) coaD 1909538..1910035 (-) 498 WP_265149786.1 pantetheine-phosphate adenylyltransferase -
  LGMS210922A_RS09370 (LGMS210922A_18390) rsmD 1910025..1910564 (-) 540 WP_265149787.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LGMS210922A_RS09375 (LGMS210922A_18400) - 1910660..1912006 (-) 1347 WP_074751404.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37828.16 Da        Isoelectric Point: 6.9823

>NTDB_id=95648 LGMS210922A_RS09360 WP_265149785.1 1908505..1909548(-) (sepM) [Lactococcus garvieae strain MS210922A]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTDMIDYVSQQKVGDEVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTINNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=95648 LGMS210922A_RS09360 WP_265149785.1 1908505..1909548(-) (sepM) [Lactococcus garvieae strain MS210922A]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTAGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGACTTGGTCAA
CCAATTCTATATGCAGACCGCGCAGAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGATATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGGTGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GCATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAGATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAATAAATAACTATACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49

Multiple sequence alignment