Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   LGMS210922A_RS09215 Genome accession   NZ_AP026069
Coordinates   1873680..1874897 (+) Length   405 a.a.
NCBI ID   WP_003133516.1    Uniprot ID   A0A3D4RHV6
Organism   Lactococcus garvieae strain MS210922A     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868680..1879897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMS210922A_RS09185 (LGMS210922A_18060) eeP 1868691..1869938 (-) 1248 WP_014025467.1 RIP metalloprotease RseP Regulator
  LGMS210922A_RS09190 (LGMS210922A_18070) - 1870114..1870908 (-) 795 WP_003133509.1 phosphatidate cytidylyltransferase -
  LGMS210922A_RS09195 (LGMS210922A_18080) - 1870905..1871642 (-) 738 WP_003133511.1 isoprenyl transferase -
  LGMS210922A_RS09200 (LGMS210922A_18090) yajC 1871843..1872178 (-) 336 WP_014025468.1 preprotein translocase subunit YajC -
  LGMS210922A_RS09205 (LGMS210922A_18100) - 1872253..1872900 (-) 648 WP_074751891.1 DNA alkylation repair protein -
  LGMS210922A_RS09210 (LGMS210922A_18110) rlmH 1872897..1873376 (-) 480 WP_003133515.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LGMS210922A_RS09215 (LGMS210922A_18120) htrA 1873680..1874897 (+) 1218 WP_003133516.1 S1C family serine protease Regulator
  LGMS210922A_RS09220 (LGMS210922A_18130) - 1874995..1875993 (+) 999 WP_265149763.1 glycosyltransferase family 4 protein -
  LGMS210922A_RS09225 (LGMS210922A_18140) - 1876006..1877340 (+) 1335 WP_265149765.1 glycosyltransferase family 4 protein -
  LGMS210922A_RS09230 (LGMS210922A_18150) - 1877391..1877615 (+) 225 WP_003133519.1 DUF1797 family protein -
  LGMS210922A_RS09235 (LGMS210922A_18160) - 1877642..1878691 (-) 1050 WP_003133520.1 BMP family lipoprotein -
  LGMS210922A_RS09240 (LGMS210922A_18170) - 1878851..1879600 (-) 750 WP_019298937.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 41787.63 Da        Isoelectric Point: 4.8808

>NTDB_id=95647 LGMS210922A_RS09215 WP_003133516.1 1873680..1874897(+) (htrA) [Lactococcus garvieae strain MS210922A]
MAKKNIASLLITGVAGGAIALGGSAIYQNMTNTPSSNNTSDNSVSTVNVQVNTDTTKAIKKISNTVVSVLNYQKSSSSND
FEKIFGGGDTSSNDSNTPQLAGEGSGVIYKKDGNTAYIVTNYHVIEGASSLEVLMAGGQKVTAEVVGSDAYSDLAVLKID
AKYVKETATFGNSDKLTVGEPAIAVGSPLGSEYANSATEGIVSSLNRNVTLQNSQGQTINVNAIQTDAAINPGNSGGALI
NIQGQVIGITSSKITSTPSGTSGSGVSVEGMGFAIPANDVVNIINKLEKDGKVIRPALGVQMVNLSSLSQNMLASLNLPE
NVTNGVAIAEVQSGMPAAKAGLKQGDVIVKINDDEITSSVNLQSTLYKSSIGDTIKVTYYRDGKQATANIKLDKTSSDIN
FDKQN

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=95647 LGMS210922A_RS09215 WP_003133516.1 1873680..1874897(+) (htrA) [Lactococcus garvieae strain MS210922A]
ATGGCAAAGAAAAATATCGCCTCATTACTTATTACGGGCGTAGCCGGAGGTGCTATCGCTCTTGGAGGTAGTGCTATCTA
CCAAAACATGACCAACACACCATCATCTAATAACACTTCGGACAATTCTGTAAGTACGGTTAACGTCCAAGTCAATACAG
ATACCACCAAAGCAATCAAGAAAATTTCGAACACTGTTGTTTCCGTTCTTAATTACCAAAAATCGTCCTCAAGCAACGAT
TTTGAGAAGATTTTCGGTGGAGGCGATACAAGCAGCAATGACAGTAACACGCCACAGCTGGCTGGTGAAGGTTCTGGTGT
TATTTATAAAAAGGATGGCAATACAGCATACATCGTTACCAACTATCACGTGATTGAAGGTGCTTCTTCCCTAGAAGTTC
TCATGGCTGGCGGCCAAAAGGTTACTGCTGAAGTTGTTGGTTCTGATGCTTATTCTGATTTAGCTGTCCTCAAAATTGAT
GCTAAGTATGTCAAAGAAACAGCAACATTCGGTAACTCTGACAAACTTACTGTTGGTGAGCCCGCTATCGCGGTTGGTTC
TCCTCTTGGAAGTGAGTATGCCAACTCAGCAACGGAAGGGATTGTTTCAAGTCTTAATCGTAATGTTACGCTGCAAAACA
GCCAAGGCCAAACAATTAATGTGAACGCAATTCAAACCGATGCTGCAATTAACCCAGGTAACTCTGGTGGTGCACTCATA
AATATTCAGGGACAAGTCATCGGTATTACTTCAAGTAAAATTACCTCAACACCAAGCGGAACAAGCGGCAGTGGTGTTTC
TGTAGAAGGAATGGGCTTTGCGATACCAGCCAATGATGTGGTCAATATTATCAATAAGTTGGAAAAAGATGGCAAAGTTA
TTCGACCTGCTCTCGGTGTACAGATGGTCAACTTGTCAAGTCTTTCACAAAATATGTTGGCTTCACTTAATCTTCCTGAA
AATGTGACAAATGGTGTTGCTATCGCTGAAGTTCAATCAGGAATGCCTGCTGCCAAAGCTGGACTCAAGCAAGGTGACGT
TATTGTCAAAATCAATGATGACGAAATCACTTCAAGTGTGAACCTTCAAAGTACACTTTATAAGTCATCGATTGGTGATA
CGATTAAGGTAACTTATTATCGTGACGGAAAACAAGCTACTGCGAATATCAAGTTGGATAAGACAAGTAGTGACATCAAC
TTTGACAAACAAAATTAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(104-249)

PDZ domain (PDZ_2)

(296-392)

Peptidase family M50 (Peptidase_M50)

(294-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D4RHV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

53.634

98.519

0.528
  htrA Streptococcus pneumoniae Rx1

53.383

98.519

0.526
  htrA Streptococcus pneumoniae D39

53.383

98.519

0.526
  htrA Streptococcus pneumoniae R6

53.383

98.519

0.526
  htrA Streptococcus pneumoniae TIGR4

53.383

98.519

0.526
  htrA Streptococcus mutans UA159

56.085

93.333

0.523
  htrA Streptococcus gordonii str. Challis substr. CH1

54.22

96.543

0.523

Multiple sequence alignment