Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFHSH190041_RS01850 Genome accession   NZ_AP026070
Coordinates   404837..406360 (-) Length   507 a.a.
NCBI ID   WP_261923629.1    Uniprot ID   -
Organism   Shewanella sp. NFH-SH190041     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 399837..411360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFHSH190041_RS01830 (NFHSH190041_03510) menD 400205..401920 (-) 1716 WP_261923626.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase -
  NFHSH190041_RS01835 (NFHSH190041_03520) - 402493..403458 (+) 966 WP_261923627.1 LysR family transcriptional regulator -
  NFHSH190041_RS01845 (NFHSH190041_03530) - 404343..404570 (+) 228 WP_261923628.1 hypothetical protein -
  NFHSH190041_RS01850 (NFHSH190041_03540) comM 404837..406360 (-) 1524 WP_261923629.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFHSH190041_RS01855 (NFHSH190041_03550) - 406379..407206 (-) 828 WP_261923630.1 GGDEF domain-containing protein -
  NFHSH190041_RS01860 (NFHSH190041_03560) - 407233..407415 (-) 183 WP_261923631.1 hypothetical protein -
  NFHSH190041_RS01865 (NFHSH190041_03580) - 407588..408931 (+) 1344 WP_261923632.1 hemolysin family protein -
  NFHSH190041_RS01870 (NFHSH190041_03590) ilvY 408959..409828 (-) 870 WP_261923633.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54300.10 Da        Isoelectric Point: 7.5932

>NTDB_id=95651 NFHSH190041_RS01850 WP_261923629.1 404837..406360(-) (comM) [Shewanella sp. NFH-SH190041]
MAMACVASRALAGVDAPPVTVEVHLSNGLPAFNLVGLPEASVKESRERVRSAIINAGFDFPMRRITVNLAPAELPKQGGR
YDLPIAIGILAASDQLPANSLNGLEFAGELALSGAIRYCPGLLPMLIQARSVDASVILPAANRDDAEIVNYDKVFFASHL
QSLSAFLHGQQTLPGLSQGTQWLEHSTEAEQPACLSDVLGQHQAKQALEIAAAGSHNLLLLGPPGTGKTMLASRITGLLP
PLNYTQALEVAAIHSVAGMALNSQRFYQRPFRNPHHTSSAVSLVGGGAVPKPGEISLAHRGVLFLDELTEFPRRVLDCLR
QPMETGEVVISRAAAKLTFASDFQLIAAMNPSPCGDAGPHSRATPEQITRYLSRLSGPFLDRFDLSIDVPRLPAGSLSQP
HAQTETSAQVRARVLAAREMQLSRAGVLNAELSGRQLQQSAGIGTAELNFLEQSVEKLGLSVRSFHRIQRVARTIADLDN
STQVERRHLAQALGYRAMDRLLASVAH

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=95651 NFHSH190041_RS01850 WP_261923629.1 404837..406360(-) (comM) [Shewanella sp. NFH-SH190041]
ATGGCGATGGCATGTGTGGCCAGTCGTGCCTTGGCCGGGGTTGACGCCCCGCCAGTCACAGTTGAAGTTCATCTCAGTAA
TGGCCTGCCGGCCTTTAATTTGGTGGGGTTACCCGAAGCCTCGGTAAAAGAATCCCGTGAGCGGGTTCGCAGTGCGATCA
TTAATGCCGGTTTTGACTTTCCCATGCGCCGTATCACGGTCAATCTGGCCCCCGCAGAGCTACCTAAACAGGGAGGTCGT
TATGATCTGCCCATCGCCATCGGAATTTTAGCCGCGTCGGATCAGCTGCCCGCCAATAGCCTTAACGGGTTAGAGTTTGC
CGGAGAATTAGCCTTATCAGGTGCGATACGATACTGCCCCGGCCTGCTCCCTATGCTGATTCAGGCTCGTAGCGTTGATG
CCAGTGTTATCCTACCAGCGGCTAATCGCGATGACGCGGAGATAGTCAATTATGACAAAGTCTTCTTTGCCAGCCATCTG
CAATCCCTCAGTGCCTTTCTCCACGGTCAGCAAACGCTACCCGGGTTAAGTCAAGGTACCCAATGGCTGGAGCATAGCAC
CGAGGCCGAACAGCCTGCCTGTCTCAGCGATGTACTGGGGCAACATCAAGCCAAACAGGCATTAGAAATTGCGGCGGCGG
GCTCGCACAATTTATTGCTACTTGGCCCGCCAGGTACAGGCAAAACCATGCTTGCCAGTCGCATAACCGGACTACTGCCC
CCGCTCAATTACACTCAAGCACTGGAAGTCGCCGCTATCCATTCCGTAGCGGGGATGGCCCTTAACAGCCAACGCTTTTA
TCAGCGCCCTTTTCGTAATCCGCACCATACCAGTTCGGCGGTCTCTCTGGTGGGCGGTGGCGCGGTGCCCAAACCCGGAG
AAATTTCGTTAGCTCATCGCGGAGTATTATTTCTTGATGAACTGACAGAGTTTCCCCGCCGGGTACTGGACTGCCTGCGC
CAGCCAATGGAAACCGGTGAAGTGGTCATTTCCCGCGCCGCTGCCAAGCTGACTTTTGCCAGTGATTTTCAACTGATAGC
GGCCATGAACCCCAGCCCATGTGGCGATGCGGGGCCCCACAGTCGAGCCACTCCGGAACAAATCACCCGTTATCTGTCGC
GTTTATCTGGCCCATTCCTTGACCGTTTTGATCTCAGCATTGATGTGCCTCGCCTACCGGCCGGAAGCCTCAGTCAGCCC
CATGCTCAAACCGAAACCAGCGCTCAGGTACGCGCGCGGGTGCTCGCCGCAAGGGAAATGCAACTGAGCCGTGCAGGCGT
ATTAAATGCGGAATTAAGTGGGCGACAACTGCAACAAAGCGCAGGCATTGGCACTGCTGAACTGAATTTTCTAGAACAAA
GTGTCGAAAAATTAGGGCTATCGGTGCGCAGTTTTCACCGCATTCAACGGGTAGCCCGCACCATTGCTGATTTAGATAAT
AGTACTCAAGTTGAACGCCGCCATCTGGCCCAAGCCCTGGGATACCGCGCCATGGATCGCCTACTGGCATCAGTGGCACA
CTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.621

100

0.556
  comM Haemophilus influenzae Rd KW20

55.315

100

0.554
  comM Glaesserella parasuis strain SC1401

54.043

100

0.54
  comM Vibrio campbellii strain DS40M4

53.28

99.211

0.529
  comM Legionella pneumophila str. Paris

48

98.619

0.473
  comM Legionella pneumophila strain ERS1305867

48

98.619

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.053

100

0.434

Multiple sequence alignment