Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WD047_RS04610 Genome accession   NZ_CP148749
Coordinates   940515..940835 (-) Length   106 a.a.
NCBI ID   WP_011707247.1    Uniprot ID   A0AAX0XL99
Organism   Aeromonas hydrophila strain AH230115     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 935515..945835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WD047_RS04590 - 935836..936513 (-) 678 WP_139749948.1 DnaT-like ssDNA-binding domain-containing protein -
  WD047_RS04595 - 936854..937825 (+) 972 WP_017410997.1 response regulator -
  WD047_RS04600 - 937898..939295 (-) 1398 WP_041218625.1 peptide MFS transporter -
  WD047_RS04605 galU 939509..940420 (-) 912 WP_017410998.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  WD047_RS04610 comEA 940515..940835 (-) 321 WP_011707247.1 ComEA family DNA-binding protein Machinery gene
  WD047_RS04615 cysQ 941003..941773 (+) 771 WP_219306433.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  WD047_RS04620 - 941855..942151 (-) 297 WP_005309589.1 YciI family protein -
  WD047_RS04625 - 942177..942728 (-) 552 WP_042067696.1 septation protein A -
  WD047_RS04630 - 942833..944338 (-) 1506 WP_139749950.1 aminotransferase class V-fold PLP-dependent enzyme -
  WD047_RS04635 - 944563..945198 (+) 636 WP_016351856.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11183.03 Da        Isoelectric Point: 9.5773

>NTDB_id=955424 WD047_RS04610 WP_011707247.1 940515..940835(-) (comEA) [Aeromonas hydrophila strain AH230115]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVTAAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=955424 WD047_RS04610 WP_011707247.1 940515..940835(-) (comEA) [Aeromonas hydrophila strain AH230115]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACGGTCACCGCCGCCAAGGAGAGCGGCAAAGTGAACCTGAACACCGCCAGTATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAGAAGGCCCAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGCATCGGGCCAGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

53.636

100

0.557
  comEA Vibrio cholerae C6706

53.636

100

0.557
  comE1/comEA Haemophilus influenzae Rd KW20

43.243

100

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

46.939

92.453

0.434
  comEA Legionella pneumophila strain ERS1305867

41.837

92.453

0.387
  comEA Legionella pneumophila str. Paris

41.837

92.453

0.387
  comEA Vibrio campbellii strain DS40M4

41

94.34

0.387
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.316

71.698

0.368