Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ09_RS07570 Genome accession   NZ_CP148259
Coordinates   1460342..1460659 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain Z1322HCJ0017     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455342..1465659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ09_RS07550 (WHQ09_07550) ctsE 1456211..1457770 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHQ09_RS07555 (WHQ09_07555) ctsX 1457760..1458347 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ09_RS07560 (WHQ09_07560) ctsP 1458351..1458959 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ09_RS07565 (WHQ09_07565) ctsD 1458952..1460370 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ09_RS07570 (WHQ09_07570) ctsR 1460342..1460659 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  WHQ09_RS07575 (WHQ09_07575) nifJ 1460683..1464243 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ09_RS07580 (WHQ09_07580) - 1464336..1464977 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=953500 WHQ09_RS07570 WP_002851255.1 1460342..1460659(-) (ctsR) [Campylobacter jejuni strain Z1322HCJ0017]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=953500 WHQ09_RS07570 WP_002851255.1 1460342..1460659(-) (ctsR) [Campylobacter jejuni strain Z1322HCJ0017]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981