Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   Q3A86_RS11760 Genome accession   NZ_CP172414
Coordinates   2830738..2831451 (-) Length   237 a.a.
NCBI ID   WP_031040348.1    Uniprot ID   -
Organism   Streptomyces sp. NBUA17     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2825738..2836451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A86_RS11750 (Q3A86_11750) - 2828214..2829155 (+) 942 WP_399138130.1 hypothetical protein -
  Q3A86_RS11755 (Q3A86_11755) clpX 2829260..2830546 (-) 1287 WP_224306860.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  Q3A86_RS11760 (Q3A86_11760) clpP 2830738..2831451 (-) 714 WP_031040348.1 ATP-dependent Clp protease proteolytic subunit Regulator
  Q3A86_RS11765 (Q3A86_11765) clpP 2831502..2832107 (-) 606 WP_031040345.1 ATP-dependent Clp protease proteolytic subunit Regulator
  Q3A86_RS11770 (Q3A86_11770) tig 2832477..2833904 (-) 1428 WP_031040342.1 trigger factor -
  Q3A86_RS11785 (Q3A86_11785) - 2834809..2835003 (-) 195 WP_031040337.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26300.73 Da        Isoelectric Point: 4.6617

>NTDB_id=953500 Q3A86_RS11760 WP_031040348.1 2830738..2831451(-) (clpP) [Streptomyces sp. NBUA17]
MNDFPGSGLYDRMHDAQDTRGAASQGRYTGPQAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVM
AQLLCLESMDPDRDISIYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQP
YSETGRGQVSDLEIAANEILRMRTQLEDMLAKHSTTPVEKIREDIERDKILTAEDTLAYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=953500 Q3A86_RS11760 WP_031040348.1 2830738..2831451(-) (clpP) [Streptomyces sp. NBUA17]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCATGCACGACGCCCAGGACACGCGTGGCGCCGCCTCCCAGGGCCG
CTACACCGGCCCGCAGGCCGAATCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACG
ACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATG
GCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCAC
GGCGCTCACGGCCATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCG
CCGCCGCCGTCCTGCTGGCCGCCGGCACGCCGGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCG
TACAGCGAGACCGGCCGCGGCCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCACGCAGCTGGA
GGACATGCTGGCCAAGCACTCCACCACGCCGGTCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCG
AGGACACCCTGGCCTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(48-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

80.169

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

79.325

0.405
  clpP Streptococcus pyogenes MGAS315

45.274

84.81

0.384
  clpP Streptococcus pyogenes JRS4

45.274

84.81

0.384
  clpP Streptococcus mutans UA159

44.39

86.498

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

85.232

0.38
  clpP Streptococcus thermophilus LMD-9

45.641

82.278

0.376
  clpP Streptococcus thermophilus LMG 18311

45.641

82.278

0.376
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

85.232

0.371
  clpP Streptococcus pneumoniae Rx1

44.388

82.7

0.367
  clpP Streptococcus pneumoniae D39

44.388

82.7

0.367
  clpP Streptococcus pneumoniae R6

44.388

82.7

0.367
  clpP Streptococcus pneumoniae TIGR4

44.388

82.7

0.367