NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	ACHZDB_RS15030	Genome accession	NZ_CP172405
Coordinates	3279084..3279710 (+)	Length	208 a.a.
NCBI ID	WP_005430931.1	Uniprot ID	A0ABQ5Y6E9
Organism	Vibrio campbellii strain LB503
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3274084..3284710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHZDB_RS15020 (ACHZDB_15020)	-	3275343..3277148 (-)	1806	WP_399424403.1	ATP-binding protein	-
ACHZDB_RS15025 (ACHZDB_15025)	tig	3277673..3278977 (+)	1305	WP_045370540.1	trigger factor	-
ACHZDB_RS15030 (ACHZDB_15030)	clpP	3279084..3279710 (+)	627	WP_005430931.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ACHZDB_RS15035 (ACHZDB_15035)	clpX	3279782..3281062 (+)	1281	WP_005430932.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACHZDB_RS15040 (ACHZDB_15040)	lon	3281193..3283544 (+)	2352	WP_005529911.1	endopeptidase La	-
ACHZDB_RS15045 (ACHZDB_15045)	-	3283736..3284008 (+)	273	WP_005430934.1	HU family DNA-binding protein	-

Sequence

Protein

Download Length: 208 a.a. Molecular weight: 22979.25 Da Isoelectric Point: 4.7297

                                >NTDB_id=953468 ACHZDB_RS15030 WP_005430931.1 3279084..3279710(+) (clpP) [Vibrio campbellii strain LB503]

MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP

GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK

QKLNNLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGIVDAVLSHRGE

Nucleotide

Download Length: 627 bp

                                >NTDB_id=953468 ACHZDB_RS15030 WP_005430931.1 3279084..3279710(+) (clpP) [Vibrio campbellii strain LB503]

ATGAGCTACCAAGAAAAAAACGCAATGTCGCCAATTATTGACGCGCTAGTGCCAATGGTGGTTGAACAAACTTCCCGCGG

CGAACGCTCTTACGACATTTACTCACGTCTGCTTAAAGAGCGCGTGATCTTTTTAACTGGTCAAGTGGAAGACCACATGG

CAAACCTTGTCGTGGCTCAACTACTTTTCCTAGAATCTGAAAATCCAGATAAAGATATTTTCCTATACATCAACTCACCA

GGCGGCAGCGTAACAGCAGGTATGTCTATCTACGACACCATGCAGTTCATCAAGCCAAATGTAAGCACAGTATGTATGGG

TCAAGCTTGCTCTATGGGTGCGTTCCTGCTTGCAGGTGGTGCGCCAGGTAAGCGTTACGTTCTGCCTAATTCACGTGTGA

TGATCCACCAACCACTAGGTGGCTTCCAAGGTCAAGCTTCTGATATCCAAATCCATGCTCAGGAAATCCTGACCATCAAG

CAGAAGCTAAACAACCTATTAGCAGAACATACTGGCCAGCCTCTTGAAGTGATTGAGCGCGATACCGATCGTGACAACTT

CATGTCGGCAGATCAGGCAGTAGAATACGGTATTGTGGATGCAGTGTTGAGCCACCGCGGCGAGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	68.947	91.346	0.63
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.83	90.385	0.577
clpP	Streptococcus pneumoniae Rx1	53.646	92.308	0.495
clpP	Streptococcus pneumoniae D39	53.646	92.308	0.495
clpP	Streptococcus pneumoniae R6	53.646	92.308	0.495
clpP	Streptococcus pneumoniae TIGR4	53.646	92.308	0.495
clpP	Streptococcus thermophilus LMG 18311	52.083	92.308	0.481
clpP	Streptococcus thermophilus LMD-9	52.083	92.308	0.481
clpP	Lactococcus lactis subsp. cremoris KW2	52.083	92.308	0.481
clpP	Streptococcus mutans UA159	51.295	92.788	0.476
clpP	Streptococcus pyogenes JRS4	51.042	92.308	0.471
clpP	Streptococcus pyogenes MGAS315	51.042	92.308	0.471
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.521	92.308	0.466

Detailed information NTG0953468