Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WHO18_RS13375 Genome accession   NZ_CP148128
Coordinates   2552239..2552574 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547239..2557574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS13355 gcvT 2547831..2548919 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  WHO18_RS13360 yqhH 2549361..2551034 (+) 1674 WP_004398544.1 SNF2-related protein -
  WHO18_RS13365 yqhG 2551055..2551849 (+) 795 WP_003230200.1 YqhG family protein -
  WHO18_RS13370 sinI 2552032..2552205 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  WHO18_RS13375 sinR 2552239..2552574 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  WHO18_RS13380 tasA 2552667..2553452 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHO18_RS13385 sipW 2553516..2554088 (-) 573 WP_003246088.1 signal peptidase I -
  WHO18_RS13390 tapA 2554072..2554833 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHO18_RS13395 yqzG 2555105..2555431 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHO18_RS13400 spoIIT 2555473..2555652 (-) 180 WP_003230176.1 YqzE family protein -
  WHO18_RS13405 comGG 2555723..2556097 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHO18_RS13410 comGF 2556098..2556481 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHO18_RS13415 comGE 2556507..2556854 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHO18_RS13420 comGD 2556838..2557269 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHO18_RS13425 comGC 2557259..2557555 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=951447 WHO18_RS13375 WP_003226345.1 2552239..2552574(+) (sinR) [Bacillus subtilis isolate FELIX_MS620]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=951447 WHO18_RS13375 WP_003226345.1 2552239..2552574(+) (sinR) [Bacillus subtilis isolate FELIX_MS620]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1