Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACH19Q_RS07770 Genome accession   NZ_CP172236
Coordinates   1705138..1706412 (-) Length   424 a.a.
NCBI ID   WP_011001652.1    Uniprot ID   Q8XYP6
Organism   Ralstonia pseudosolanacearum strain UMN24-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700138..1711412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH19Q_RS07745 (ACH19Q_07745) - 1701702..1701827 (+) 126 WP_267909775.1 hypothetical protein -
  ACH19Q_RS07760 (ACH19Q_07760) - 1702101..1702373 (-) 273 WP_003267811.1 HU family DNA-binding protein -
  ACH19Q_RS07765 (ACH19Q_07765) lon 1702547..1704967 (-) 2421 WP_011001653.1 endopeptidase La -
  ACH19Q_RS07770 (ACH19Q_07770) clpX 1705138..1706412 (-) 1275 WP_011001652.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACH19Q_RS07775 (ACH19Q_07775) clpP 1706578..1707231 (-) 654 WP_003267806.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACH19Q_RS07780 (ACH19Q_07780) tig 1707261..1708610 (-) 1350 WP_011001651.1 trigger factor -
  ACH19Q_RS07785 (ACH19Q_07785) mnmC 1708865..1710838 (-) 1974 WP_200763034.1 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -
  ACH19Q_RS07790 (ACH19Q_07790) - 1710910..1711104 (-) 195 WP_011001649.1 hypothetical protein -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46403.57 Da        Isoelectric Point: 5.7601

>NTDB_id=951446 ACH19Q_RS07770 WP_011001652.1 1705138..1706412(-) (clpX) [Ralstonia pseudosolanacearum strain UMN24-1]
MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAISEKEGGLAVKSDLPTPHEIRQSLDQY
VIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGED
VENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQ
VDTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDE
AALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIARKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVID
ESTIAGDGKPLLMYEEQPKVAGSN

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=951446 ACH19Q_RS07770 WP_011001652.1 1705138..1706412(-) (clpX) [Ralstonia pseudosolanacearum strain UMN24-1]
ATGGCGGACAAGAAAGGCTCGACTGGCGAAAAGCTGCTGTACTGCTCGTTCTGCGGCAAGAGCCAGCATGAAGTCAAGAA
ACTGATTGCCGGCCCCTCGGTCTTCATCTGCGATGAATGTATCGACCTGTGCAATGAAATCATCCGGGACGAGGCCGCGA
TCTCCGAGAAGGAGGGCGGGCTGGCGGTCAAATCCGACCTGCCGACCCCGCACGAGATTCGCCAGAGCCTGGATCAATAC
GTGATCGGCCAGGAGCAGGCCAAGAAGATCCTGGCGGTTGCGGTCTATAACCATTACAAGCGCTTGAAGCATCTCGGCAA
GAAGGATGATGTCGAGCTGTCCAAGAGCAACATCCTGCTCATCGGGCCGACCGGCTCGGGCAAGACGCTGCTGGCGCAGA
CGCTGGCTCGCTTGCTGAACGTGCCGTTCGTCATCGCTGACGCCACCACGCTGACCGAAGCCGGCTACGTGGGCGAGGAC
GTCGAGAACATCATCCAGAAGCTGCTGCAGAACTGCAATTACGAGGTCGACAAGGCACAGCGTGGCATTGTCTACATCGA
TGAGATCGACAAGATTTCGCGCAAGTCCGACAACCCGTCCATCACCCGCGACGTTTCCGGGGAAGGCGTGCAGCAGGCCC
TGCTGAAGCTGATTGAAGGGACGATGGCCTCGGTGCCGCCGCAGGGCGGGCGCAAGCACCCGAACCAGGATTTCCTCCAG
GTCGACACTACCAATATCCTGTTTATCTGCGGCGGTGCGTTTGATGGTCTCGAGAAGATCATCACGCAGCGCTCGGACAA
GTCCGGCATCGGCTTCGGCGCCGAGGTCAAGAGCAAGGAAGAGCGGGACGTCAACGAAGTGCTGCCGCAGGTGGAGCCGG
AAGACCTGATCAAGTTCGGCCTGATTCCCGAACTGATCGGCCGCCTGCCCGTGGTGGCGACGCTGGCCAAGCTGGACGAG
GCCGCGCTGATGGAGATCCTGGTCGAGCCGAAGAATGCAATCGTCAAGCAGTATCAAAAACTGCTGGCCATGGAAGGGGT
GGAGCTGGAAATCCGTCCGAGCGCGCTGACGGCGATTGCCCGCAAGGCGATCAAGCGCAAGACGGGGGCGCGCGGATTGC
GCTCCATCGTCGAGCACGCGCTGATGGATGTGATGTACGACCTTCCCAACCACAAGGGTGTGCAGAAGGTGGTGATCGAC
GAGAGCACGATCGCCGGCGACGGCAAGCCCTTGCTGATGTACGAAGAGCAACCCAAGGTTGCAGGTTCCAACTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-393)

ClpX C4-type zinc finger (zf-C4_ClpX)

(13-49)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XYP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

60.688

95.991

0.583
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.342

95.047

0.517