Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WHL51_RS12125 Genome accession   NZ_CP148102
Coordinates   2383680..2385410 (-) Length   576 a.a.
NCBI ID   WP_003226422.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2378680..2390410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS12105 - 2379280..2379414 (+) 135 WP_003226433.1 hypothetical protein -
  WHL51_RS12110 - 2379487..2380605 (+) 1119 WP_003226431.1 NADH-dependent flavin oxidoreductase -
  WHL51_RS12115 spo0A 2381146..2381949 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHL51_RS12120 spoIVB 2382226..2383506 (-) 1281 WP_003226424.1 SpoIVB peptidase -
  WHL51_RS12125 recN 2383680..2385410 (-) 1731 WP_003226422.1 DNA repair protein RecN Machinery gene
  WHL51_RS12130 argR 2385446..2385895 (-) 450 WP_003226420.1 arginine repressor ArgR -
  WHL51_RS12135 - 2385992..2386837 (-) 846 WP_003226418.1 TlyA family RNA methyltransferase -
  WHL51_RS12140 dxs 2386834..2388735 (-) 1902 WP_003226415.1 1-deoxy-D-xylulose-5-phosphate synthase -
  WHL51_RS12145 - 2388916..2389806 (-) 891 WP_003226410.1 polyprenyl synthetase family protein -
  WHL51_RS12150 - 2389796..2390050 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64578.34 Da        Isoelectric Point: 4.7658

>NTDB_id=950430 WHL51_RS12125 WP_003226422.1 2383680..2385410(-) (recN) [Bacillus spizizenii str. W23]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFDVC
TEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLRLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYGSLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPMVNGQPVQLTDQGIDSVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=950430 WHL51_RS12125 WP_003226422.1 2383680..2385410(-) (recN) [Bacillus spizizenii str. W23]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGACGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAGACAAAAGCCGAGCTTGAAGGGCTGTTTCTATTGGAGAGCGGCCATCCCGTTTTTGACGTATGC
ACTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTTAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCGGCTTTTGGATAAGTTTGCCGGAGCCGAAGTAGAAAGCGCGCTTCAA
GCGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTAGACCTCATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTCGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAACGCCAGCAAATTTCAAACTTTGAGAAGATCTATGGATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCCGATATTAACGAACCGCTGAAAAAACT
GTCTGAGAGTGTGTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGCCTGAATTATATTGAGACGCGTCTTAATGAAATTAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGACATTTTGGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTGGCGGTGGAAGCGGCAAATGTTTCACAAATCAGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGAGAATTAAAAAGCCTCTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCTCGCAATGAGGAGGCGCCGATGGTAAACGGCCAGCCTGTTCAGCTGACTGACCAAGGAATTGATTCGGT
CAAGTTTTTAATTTCAACTAACACAGGCGAGCCTCTGAAATCCCTTTCGAAAGTCGCTTCCGGAGGAGAGCTGTCCCGGG
TAATGCTTGCCATAAAAAGCATTTTTTCCTCGCAGCAGGATGTGACGTCAATTATATTCGATGAGGTGGATACCGGTGTA
AGCGGCAGAGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTCTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTGAAAGACGGCAGAACCACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCCGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTCTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.049

100

0.97