Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WHL51_RS12115 Genome accession   NZ_CP148102
Coordinates   2381146..2381949 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376146..2386949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS12090 - 2377206..2377937 (-) 732 WP_003226439.1 glycerophosphodiester phosphodiesterase -
  WHL51_RS12095 - 2378017..2378637 (-) 621 WP_079996401.1 N-acetylmuramoyl-L-alanine amidase -
  WHL51_RS12100 - 2378657..2378953 (-) 297 WP_032727414.1 hypothetical protein -
  WHL51_RS12105 - 2379280..2379414 (+) 135 WP_003226433.1 hypothetical protein -
  WHL51_RS12110 - 2379487..2380605 (+) 1119 WP_003226431.1 NADH-dependent flavin oxidoreductase -
  WHL51_RS12115 spo0A 2381146..2381949 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHL51_RS12120 spoIVB 2382226..2383506 (-) 1281 WP_003226424.1 SpoIVB peptidase -
  WHL51_RS12125 recN 2383680..2385410 (-) 1731 WP_003226422.1 DNA repair protein RecN Machinery gene
  WHL51_RS12130 argR 2385446..2385895 (-) 450 WP_003226420.1 arginine repressor ArgR -
  WHL51_RS12135 - 2385992..2386837 (-) 846 WP_003226418.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=950429 WHL51_RS12115 WP_003226427.1 2381146..2381949(-) (spo0A) [Bacillus spizizenii str. W23]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=950429 WHL51_RS12115 WP_003226427.1 2381146..2381949(-) (spo0A) [Bacillus spizizenii str. W23]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTTGCCTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGATGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCTTCCTATTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATTCGCCAGGTCAGCGGAAATGCCAGCAGCGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCGGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCCATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAGTTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGGAACATTGATTCCATTTCCTCGTTGTTCGGCTATACTGTC
AGCATGACAAAAGCCAAACCTACCAACAGCGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1