Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V7R92_RS07540 Genome accession   NZ_CP147490
Coordinates   1584713..1585963 (+) Length   416 a.a.
NCBI ID   WP_338756991.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain LMT1-73     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1579713..1590963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R92_RS07520 - 1580427..1581722 (+) 1296 WP_021742876.1 pitrilysin family protein -
  V7R92_RS07525 - 1581700..1582989 (+) 1290 WP_021742877.1 pitrilysin family protein -
  V7R92_RS07530 - 1583103..1584008 (+) 906 WP_011668110.1 helix-turn-helix domain-containing protein -
  V7R92_RS07535 pgsA 1584070..1584657 (+) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V7R92_RS07540 cinA 1584713..1585963 (+) 1251 WP_338756991.1 competence/damage-inducible protein A Machinery gene
  V7R92_RS07545 recA 1586057..1587190 (+) 1134 WP_011667973.1 recombinase RecA Machinery gene
  V7R92_RS07550 - 1587273..1587425 (-) 153 WP_338756992.1 hypothetical protein -
  V7R92_RS07555 rny 1587753..1589312 (+) 1560 WP_085763328.1 ribonuclease Y -
  V7R92_RS07560 - 1589444..1590238 (+) 795 WP_024525499.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44746.88 Da        Isoelectric Point: 5.2849

>NTDB_id=946290 V7R92_RS07540 WP_338756991.1 1584713..1585963(+) (cinA) [Levilactobacillus brevis strain LMT1-73]
MQAEIIAVGTEILLGQIVDTNSAFIARELAEAGIEVYYHSLVGDNATRLTAVVEQARSRSDLVIISGGLGPTKDDLTKQT
VAHLLGVKLVEDALAMAKIRRRFAINGREMTPNNRLQALYPAGSQPLANRTGLAVGAFYQDPDGADIMLLPGPPSETEPM
FREQALPLLKQTYPRSEYLSSRVLRFFGIGESQLVTQLSDLIDQQTNPTIAPYAKVNEVTLRLTAQAPDEMQGQRLLDDL
TATIKARVGDYLYGYGDDNSLAAVVVQTLIDRQLTITAAESLTAGQFQSTLGSVPGVSAVFPGGFVTYAASAKHDLLGVS
QATIDQDGVVSAATAKEMAARARERLDTDFSLSFTGVAGPDALEGQPAGTVWLGLAQRGQQPQAKLLHLTGTRSAIRERS
VLTGLDWLRRTLQKVK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=946290 V7R92_RS07540 WP_338756991.1 1584713..1585963(+) (cinA) [Levilactobacillus brevis strain LMT1-73]
GTGCAAGCAGAAATTATTGCGGTTGGTACAGAGATTTTACTCGGGCAAATTGTGGATACGAACTCTGCCTTCATTGCGCG
CGAACTGGCGGAAGCTGGGATTGAGGTGTATTACCATTCTCTAGTAGGTGATAACGCAACCCGGTTAACGGCTGTTGTTG
AACAAGCCCGTTCGCGGAGTGATTTAGTGATTATTAGTGGGGGATTAGGACCGACCAAAGATGATTTGACAAAACAAACG
GTCGCTCACTTGTTAGGCGTAAAGTTGGTTGAAGATGCGTTGGCAATGGCTAAGATTCGTCGCCGGTTTGCTATCAATGG
CCGTGAGATGACGCCTAATAATCGCCTACAAGCTTTATATCCAGCAGGCAGTCAGCCCTTAGCAAATCGGACTGGGTTAG
CTGTGGGAGCTTTTTATCAAGATCCTGATGGTGCGGACATCATGCTATTACCGGGACCACCAAGTGAGACTGAACCCATG
TTTCGTGAGCAAGCCTTACCCCTGCTGAAGCAAACATATCCACGAAGTGAGTACTTGTCTTCACGGGTACTTCGGTTCTT
TGGCATCGGCGAAAGTCAATTGGTCACTCAACTGAGTGATCTGATTGACCAGCAGACTAATCCGACCATCGCTCCTTATG
CTAAAGTTAATGAAGTAACGTTACGTTTAACCGCACAGGCCCCGGATGAGATGCAAGGGCAACGCCTCTTAGATGACTTA
ACGGCGACGATTAAGGCCCGCGTAGGGGATTATCTTTATGGTTATGGTGATGATAATTCATTGGCGGCAGTGGTGGTTCA
GACACTCATTGACCGTCAATTGACCATTACGGCTGCTGAGAGCTTAACGGCCGGTCAATTTCAAAGTACCTTGGGAAGTG
TTCCCGGTGTTTCGGCGGTTTTCCCTGGTGGTTTTGTCACCTATGCGGCTAGTGCCAAGCATGACTTATTGGGAGTCTCG
CAGGCCACGATTGATCAGGATGGTGTGGTTAGTGCGGCGACAGCTAAGGAAATGGCAGCACGTGCCCGAGAACGGCTGGA
TACTGATTTTTCGTTGAGCTTCACAGGAGTTGCTGGCCCGGACGCCTTGGAAGGCCAACCGGCTGGAACAGTCTGGTTAG
GTTTAGCGCAACGGGGACAACAACCACAGGCAAAACTGTTACATTTGACGGGTACGCGATCGGCAATTCGGGAACGGAGT
GTCTTGACCGGGTTGGACTGGTTGCGACGAACATTGCAAAAAGTAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

51.325

99.76

0.512
  cinA Streptococcus mitis SK321

50

100

0.505
  cinA Streptococcus mitis NCTC 12261

49.881

100

0.505
  cinA Streptococcus pneumoniae TIGR4

48.931

100

0.495
  cinA Streptococcus pneumoniae Rx1

48.931

100

0.495
  cinA Streptococcus pneumoniae R6

48.931

100

0.495
  cinA Streptococcus pneumoniae D39

48.694

100

0.493
  cinA Bacillus subtilis subsp. subtilis str. 168

47.7

99.279

0.474
  cinA Streptococcus suis isolate S10

44.471

100

0.445