Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   WAA16_RS08105 Genome accession   NZ_CP146984
Coordinates   1628370..1629620 (+) Length   416 a.a.
NCBI ID   WP_060596326.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1623370..1634620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS08080 (WAA16_08080) - 1624779..1625507 (+) 729 WP_106038725.1 SDR family oxidoreductase -
  WAA16_RS08085 (WAA16_08085) - 1625581..1625838 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  WAA16_RS08090 (WAA16_08090) - 1625970..1626761 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  WAA16_RS08095 (WAA16_08095) - 1626785..1627696 (+) 912 WP_106047806.1 helix-turn-helix domain-containing protein -
  WAA16_RS08100 (WAA16_08100) pgsA 1627772..1628353 (+) 582 WP_066030887.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WAA16_RS08105 (WAA16_08105) cinA 1628370..1629620 (+) 1251 WP_060596326.1 competence/damage-inducible protein A Machinery gene
  WAA16_RS08110 (WAA16_08110) recA 1629797..1630837 (+) 1041 WP_034662211.1 recombinase RecA Machinery gene
  WAA16_RS08115 (WAA16_08115) rny 1631338..1632900 (+) 1563 WP_003211958.1 ribonuclease Y -
  WAA16_RS08120 (WAA16_08120) - 1632989..1633783 (+) 795 WP_034662209.1 TIGR00282 family metallophosphoesterase -
  WAA16_RS08125 (WAA16_08125) spoVS 1633985..1634245 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45585.67 Da        Isoelectric Point: 4.9867

>NTDB_id=945300 WAA16_RS08105 WP_060596326.1 1628370..1629620(+) (cinA) [Bacillus pumilus strain S9]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLAGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=945300 WAA16_RS08105 WP_060596326.1 1628370..1629620(+) (cinA) [Bacillus pumilus strain S9]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGGTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTTATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGACTACTT
TCGAAAGACTGGACGAGACATGTCGCCGAATAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTAAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAGACGATACATTTTATATGTTGCTTCCTGGACCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAGCCGCTGATTTCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCACGGGTAGGTGAGTACTTCTACGGGTATGGTGATACATCACTAGTCCGTGAAGC
TTCCAAGGCCTTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACTGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTGTCGTTTGTTATACAAATCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACGTTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTCTAGAGCTTGCTGAAGGTGCTAGAAAGCT
CGCGGGAAGTGATATTGGCATTAGTTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397