Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WAX88_RS11405 Genome accession   NZ_CP146973
Coordinates   2512803..2514029 (+) Length   408 a.a.
NCBI ID   WP_106338472.1    Uniprot ID   A0AAD3ZVT0
Organism   Photobacterium damselae subsp. damselae strain WMD-P3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2507803..2519029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX88_RS11385 (WAX88_11385) pdhR 2508516..2509289 (-) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  WAX88_RS11390 (WAX88_11390) ampD 2509648..2510226 (-) 579 WP_106261933.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WAX88_RS11395 (WAX88_11395) - 2510612..2511043 (+) 432 WP_341508791.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WAX88_RS11400 (WAX88_11400) pilB 2511046..2512737 (+) 1692 WP_151171379.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WAX88_RS11405 (WAX88_11405) pilC 2512803..2514029 (+) 1227 WP_106338472.1 type II secretion system F family protein Machinery gene
  WAX88_RS11410 (WAX88_11410) pilD 2514212..2515090 (+) 879 WP_106338474.1 A24 family peptidase Machinery gene
  WAX88_RS11415 (WAX88_11415) coaE 2515092..2515694 (+) 603 WP_109374725.1 dephospho-CoA kinase -
  WAX88_RS11420 (WAX88_11420) zapD 2515762..2516499 (+) 738 WP_005297594.1 cell division protein ZapD -
  WAX88_RS11425 (WAX88_11425) yacG 2516508..2516717 (+) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  WAX88_RS11430 (WAX88_11430) mutT 2516902..2517309 (+) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45016.15 Da        Isoelectric Point: 10.0330

>NTDB_id=945250 WAX88_RS11405 WP_106338472.1 2512803..2514029(+) (pilC) [Photobacterium damselae subsp. damselae strain WMD-P3]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=945250 WAX88_RS11405 WP_106338472.1 2512803..2514029(+) (pilC) [Photobacterium damselae subsp. damselae strain WMD-P3]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACAGCCATTACTCGCCAACTTGCGACCATG
ATCGAATCAGGGGTCCCAATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCATCATAAAGCAGAAGTGCGCGCAGTATT
AACTCAGGTTAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTACGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCTCTACTAACAG
GTCTACAGTCGGCTGGAAAAACCGCAGGAAACTTACATATTGAAGAGGCCATTATGGAAGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTAATTGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373