Detailed information NTG0945251

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WAX88_RS11410
• Genome accession: NZ_CP146973
• Coordinates: 2514212..2515090 (+)
• Length: 292 a.a.
• NCBI ID: WP_106338474.1
• Uniprot ID: -
• Organism: Photobacterium damselae subsp. damselae strain WMD-P3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2509212..2520090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAX88_RS11390 (WAX88_11390)	ampD	2509648..2510226 (-)	579	WP_106261933.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
WAX88_RS11395 (WAX88_11395)	-	2510612..2511043 (+)	432	WP_341508791.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
WAX88_RS11400 (WAX88_11400)	pilB	2511046..2512737 (+)	1692	WP_151171379.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WAX88_RS11405 (WAX88_11405)	pilC	2512803..2514029 (+)	1227	WP_106338472.1	type II secretion system F family protein	Machinery gene
WAX88_RS11410 (WAX88_11410)	pilD	2514212..2515090 (+)	879	WP_106338474.1	A24 family peptidase	Machinery gene
WAX88_RS11415 (WAX88_11415)	coaE	2515092..2515694 (+)	603	WP_109374725.1	dephospho-CoA kinase	-
WAX88_RS11420 (WAX88_11420)	zapD	2515762..2516499 (+)	738	WP_005297594.1	cell division protein ZapD	-
WAX88_RS11425 (WAX88_11425)	yacG	2516508..2516717 (+)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
WAX88_RS11430 (WAX88_11430)	mutT	2516902..2517309 (+)	408	WP_069530749.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32529.06 Da
• Isoelectric Point: 8.2918

>NTDB_id=945251 WAX88_RS11410 WP_106338474.1 2514212..2515090(+) (pilD) [Photobacterium damselae subsp. damselae strain WMD-P3]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHAPISRRYPMIELLTAALCGTVAILFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=945251 WAX88_RS11410 WP_106338474.1 2514212..2515090(+) (pilD) [Photobacterium damselae subsp. damselae strain WMD-P3]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATTGAAGCGTTTCCAGATTTAATCA
AAGCCGATGCGAAGCTAAATACTGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATCCCTGTTATTAGTTGGCTGGTATTAAAGGGGAAGTGCAAATCTTGTCACGCGCCGATTAGCCG
ACGTTACCCTATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCGCCAACTTGGTGGGCGG
TTGCAGTAATCTTTTTCACTTTCGCCTTAATTGCTCTGACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCTCTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTGTCGCTACAAGATTCTGTGATTGG
TGCGATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGATCTTTAAATTATTAACCAAAAAAGATGGTATGGGTTATG
GCGACTTTAAGCTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTGCCTGTTGTGGTTCTGCTATCCTCTCTT
GCCGGGGCAATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCAGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.753	100	0.658
pilD	Vibrio cholerae strain A1552	62.457	100	0.627
pilD	Acinetobacter nosocomialis M2	52.045	92.123	0.479
pilD	Acinetobacter baumannii D1279779	52.045	92.123	0.479
pilD	Neisseria gonorrhoeae MS11	47.842	95.205	0.455