Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   ACFW98_RS18685 Genome accession   NZ_CP170719
Coordinates   3840601..3843483 (+) Length   960 a.a.
NCBI ID   WP_395096623.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3835601..3848483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS18660 (ACFW98_18660) - 3836039..3836806 (+) 768 WP_395096622.1 enoyl-CoA hydratase -
  ACFW98_RS18665 (ACFW98_18665) - 3836831..3837016 (-) 186 WP_259425221.1 YhzD family protein -
  ACFW98_RS18670 (ACFW98_18670) - 3837122..3838018 (+) 897 WP_007409231.1 ABC transporter ATP-binding protein -
  ACFW98_RS18675 (ACFW98_18675) - 3838011..3839270 (+) 1260 WP_015239503.1 ABC transporter permease -
  ACFW98_RS18680 (ACFW98_18680) - 3839381..3840604 (+) 1224 WP_254003642.1 DNA repair exonuclease -
  ACFW98_RS18685 (ACFW98_18685) sbcE 3840601..3843483 (+) 2883 WP_395096623.1 AAA family ATPase Machinery gene
  ACFW98_RS18690 (ACFW98_18690) yhaM 3843557..3844501 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  ACFW98_RS18695 (ACFW98_18695) - 3844617..3844844 (+) 228 WP_007409227.1 sporulation YhaL family protein -
  ACFW98_RS18700 (ACFW98_18700) - 3844901..3845898 (-) 998 Protein_3610 IS3 family transposase -
  ACFW98_RS18705 (ACFW98_18705) - 3846019..3846876 (-) 858 WP_039252140.1 peptidylprolyl isomerase -
  ACFW98_RS18710 (ACFW98_18710) yhzE1 3847035..3847121 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  ACFW98_RS18715 (ACFW98_18715) yhzE2 3847246..3847332 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  ACFW98_RS18720 (ACFW98_18720) - 3847389..3847607 (-) 219 WP_003155245.1 hypothetical protein -
  ACFW98_RS18725 (ACFW98_18725) - 3847668..3848198 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109674.66 Da        Isoelectric Point: 7.6228

>NTDB_id=945251 ACFW98_RS18685 WP_395096623.1 3840601..3843483(+) (sbcE) [Bacillus amyloliquefaciens strain JP5008]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPEALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQADLLAPNEDLLQKERQLQELS
GEQHMYESRGEQLSAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQQLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGSGHKKKKPAISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VRERLHVLLAQVERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREQTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=945251 ACFW98_RS18685 WP_395096623.1 3840601..3843483(+) (sbcE) [Bacillus amyloliquefaciens strain JP5008]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGATCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGGTTAAATGAAGCGGGTAAAACGACATTGATGTCCTTTATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGTGCTGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTCTCCGATACAGACCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCAGAAGCGGCGGCAAAGCTTGACGGG
CGACTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGAAGCATTGAAGCAATTCCCGAAGGA
TGGAATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGGCTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGATCTGCTCGCTCCAAATGAGGACTTGCTGCAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTATGAATCGCGCGGCGAACAGCTTTCGGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTCGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTACAGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAACCGCTGCCGTCAGAAAGAGGAGG
GTCCGGACACAAGAAAAAGAAGCCGGCGATCTCTAAAGAAGCGGCTGATCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAGTGGGAGGCCGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAACTGGGGTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAGAGAAAGACTGCACGTTTTGCTGGCGCAGGTGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTGGAGCCGTACATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCCCAGCTCCGTGAGCAAACCG
CTTTATTAACGGTGAAGCAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATTATAAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGACCGCTTACGGACGGACGCTATCACAAAT
TGTATTTTTCCGAGGCTGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCTGCAGGCGAACTCTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATTCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTGCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGCCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

57.158

100

0.574