Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   WAX86_RS14010 Genome accession   NZ_CP146970
Coordinates   3046541..3048268 (-) Length   575 a.a.
NCBI ID   WP_376788105.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3041541..3053268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX86_RS13985 (WAX86_13985) - 3041927..3042124 (+) 198 WP_341488927.1 DUF2970 domain-containing protein -
  WAX86_RS13990 (WAX86_13990) dam 3042108..3042950 (-) 843 WP_005302664.1 adenine-specific DNA-methyltransferase -
  WAX86_RS13995 (WAX86_13995) - 3043058..3044569 (-) 1512 WP_341488928.1 AAA family ATPase -
  WAX86_RS14000 (WAX86_14000) aroB 3044584..3045663 (-) 1080 WP_044174096.1 3-dehydroquinate synthase -
  WAX86_RS14005 (WAX86_14005) aroK 3045693..3046211 (-) 519 WP_036765246.1 shikimate kinase AroK -
  WAX86_RS14010 (WAX86_14010) pilQ 3046541..3048268 (-) 1728 WP_376788105.1 type IV pilus secretin PilQ Machinery gene
  WAX86_RS14015 (WAX86_14015) - 3048292..3048810 (-) 519 WP_232092150.1 pilus assembly protein PilP -
  WAX86_RS14020 (WAX86_14020) - 3048816..3049406 (-) 591 WP_068945317.1 type 4a pilus biogenesis protein PilO -
  WAX86_RS14025 (WAX86_14025) - 3049403..3050044 (-) 642 WP_237035002.1 PilN domain-containing protein -
  WAX86_RS14030 (WAX86_14030) pilM 3050041..3051039 (-) 999 WP_044174102.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62724.21 Da        Isoelectric Point: 4.9029

>NTDB_id=945224 WAX86_RS14010 WP_376788105.1 3046541..3048268(-) (pilQ) [Photobacterium damselae subsp. damselae strain WMD-P2]
MKRMLSVSLGWQRCWVVMLCCWLGLSQAAIAAGMNLVNNQITDLDFKRDNRGRGVLTVQLAKPQSLVDMRRSGKQLHIDI
FDTAIKDDMLYVLDVVDFATVVRSIETFRTEKGSKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYK
GKPISINFQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATN
ERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITAL
DIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQ
VAKLGDILLDLELSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKL
VLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMG
KRELLIFVTPKIITQ

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=945224 WAX86_RS14010 WP_376788105.1 3046541..3048268(-) (pilQ) [Photobacterium damselae subsp. damselae strain WMD-P2]
ATGAAAAGGATGTTATCGGTCAGCTTGGGTTGGCAACGTTGTTGGGTAGTTATGTTGTGCTGTTGGCTTGGTCTCTCCCA
AGCTGCCATTGCTGCTGGCATGAATCTTGTGAATAACCAAATCACTGACTTAGATTTTAAGCGTGATAACCGTGGACGAG
GCGTGCTCACTGTTCAGTTAGCCAAACCTCAATCTCTGGTTGATATGCGCCGTTCAGGGAAGCAATTACACATCGATATC
TTTGATACCGCGATTAAAGATGACATGTTGTATGTACTCGATGTGGTTGACTTTGCAACGGTTGTCCGTTCGATTGAAAC
ATTTCGCACTGAGAAAGGCAGCAAGCTTATTCTCAATATGGCTGGCGTATTTGATTATGATTACCAATTAAAAGGCTCTC
GTCTTGAAGTTGTTTTGAACGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAA
GGTAAGCCCATCTCCATTAACTTCCAAGATGTTCCTGTGCGTAACGTATTGCAGTTAGTTGCCGAATATAATGATTTTAA
TCTCGTGGTTTCCGATACTGTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCACAAGTGCTCGATATTA
TTTTGCAATCAAAAGGCTTGGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAAT
GAGCGTCAAGAGATGGAAGCCAAACGTAAAGAAGATGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGC
TAAAGCAGGAGATATTGCAGACCTTTTACTCGGAACGAAAGATGGAGTCAGTATGCTATCTCAACGCGGGTCTTTGCATG
TTGATGAGCGTACTAATGCCATTATCATCAAAGATATCCCTGAGAGTATTGATAGCATTGAAGAGATTATCACGGCATTA
GATATTCCCGTTAAACAGGTTCAGATAGAAGCTCGTATTGTTACTGTTGATGAAGGGGATATTGACGAGTTAGGGGTACG
TTGGGGTGTCGTTAATCAAAACGGTAGTACAACCATTGGTGGCTCAATTGAAGGTAACTTGGCCAGTTCGGGCTTATTGG
GTGATGACGCAACTGTTGATGATTTCTTAAATGTAAATTTAGGTGCAATTACTCCTGGGGCATCGAGTATTGCATTTCAG
GTGGCAAAACTGGGCGATATTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCAAAAGCAGAGATTATTTCTAG
TCCTCGATTAGTGACTACCAATAAAAAAGCGGCCTACATCGAACAAGGTACTGAAATCCCTTATTTAGAAGCGGCGTCCA
GTGGTGCGGTATCGGTAGACTTTAAAAAGGCCGTATTGAGTTTGATGGTCACACCACAAATTACCCCAGATGATAAATTG
GTGCTCGATCTGCTGGTCACGCAAGATAAAGTAGGGGAAACAGTTGTGACCGGAACCGGAGAAGCGGTCGCTATTGATAC
TCAACGAATTGGCACGCAAGTTCTGGTCAATAACGGCGAGACTGTGGTCTTAGGTGGTATCTACCAGCATCAGGTGAATA
ATTCTGTCCGTAAAGTCCCTTTGTTGGGTGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGC
AAGCGTGAACTGTTGATTTTCGTCACACCAAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(186-234)

Bacterial type II/III secretion system short domain (Secretin_N)

(260-326)

Bacterial type II and III secretion system protein (Secretin)

(415-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

61.296

99.304

0.609
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

61.296

99.304

0.609
  pilQ Vibrio campbellii strain DS40M4

61.111

97.043

0.593
  pilQ Legionella pneumophila strain Lp02

42.831

94.609

0.405
  pilQ Legionella pneumophila strain ERS1305867

42.831

94.609

0.405
  pilQ Pseudomonas aeruginosa PAK

41.103

97.739

0.402
  comQ Acinetobacter baylyi ADP1

40.388

98.609

0.398
  pilQ Acinetobacter baumannii D1279779

39.138

100

0.395
  pilQ Acinetobacter baumannii strain A118

39.138

100

0.395