Detailed information NTG0944262

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: V9W60_RS16595
• Genome accession: NZ_CP146759
• Coordinates: 3213305..3213991 (-)
• Length: 228 a.a.
• NCBI ID: WP_198527543.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain JJ61
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3208305..3218991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V9W60_RS16560 (V9W60_16560)	fliW	3208441..3208875 (-)	435	WP_025208061.1	flagellar assembly protein FliW	-
V9W60_RS16565 (V9W60_16565)	-	3208904..3209482 (-)	579	WP_024719238.1	DUF6470 family protein	-
V9W60_RS16570 (V9W60_16570)	flgL	3209529..3210440 (-)	912	WP_008348257.1	flagellar hook-associated protein FlgL	-
V9W60_RS16575 (V9W60_16575)	flgK	3210449..3211969 (-)	1521	WP_024719239.1	flagellar hook-associated protein FlgK	-
V9W60_RS16580 (V9W60_16580)	-	3211985..3212467 (-)	483	WP_007499977.1	flagellar protein FlgN	-
V9W60_RS16585 (V9W60_16585)	flgM	3212486..3212749 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
V9W60_RS16590 (V9W60_16590)	-	3212829..3213248 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
V9W60_RS16595 (V9W60_16595)	comFC	3213305..3213991 (-)	687	WP_198527543.1	ComF family protein	Machinery gene
V9W60_RS16600 (V9W60_16600)	-	3213988..3214281 (-)	294	WP_008348267.1	competence protein ComFB	-
V9W60_RS16605 (V9W60_16605)	comFA	3214346..3215473 (-)	1128	WP_041091472.1	DEAD/DEAH box helicase	Machinery gene
V9W60_RS16610 (V9W60_16610)	-	3215845..3216687 (-)	843	WP_024719242.1	DegV family protein	-
V9W60_RS16615 (V9W60_16615)	degU	3216899..3217588 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
V9W60_RS16620 (V9W60_16620)	degS	3217653..3218828 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26102.63 Da
• Isoelectric Point: 10.1478

>NTDB_id=944262 V9W60_RS16595 WP_198527543.1 3213305..3213991(-) (comFC) [Bacillus altitudinis strain JJ61]
MICPICESHFVAAFTWKSFLLLNEDLLCVACKNHLMKIQGPTCPKCGRTQSNDQLCQDCSRWNKRRDFAEILVMNRSVYA
YNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=944262 V9W60_RS16595 WP_198527543.1 3213305..3213991(-) (comFC) [Bacillus altitudinis strain JJ61]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTTGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCTTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAACGCAATCAAATGATC
AATTGTGTCAGGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCTAT
CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (161-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	38.865	100	0.39
comFC/cflB	Streptococcus mitis NCTC 12261	38.428	100	0.386
comFC/cflB	Streptococcus pneumoniae TIGR4	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae Rx1	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae D39	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae R6	37.555	100	0.377