Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V9W60_RS16615 Genome accession   NZ_CP146759
Coordinates   3216899..3217588 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain JJ61     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3211899..3222588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS16580 (V9W60_16580) - 3211985..3212467 (-) 483 WP_007499977.1 flagellar protein FlgN -
  V9W60_RS16585 (V9W60_16585) flgM 3212486..3212749 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  V9W60_RS16590 (V9W60_16590) - 3212829..3213248 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  V9W60_RS16595 (V9W60_16595) comFC 3213305..3213991 (-) 687 WP_198527543.1 ComF family protein Machinery gene
  V9W60_RS16600 (V9W60_16600) - 3213988..3214281 (-) 294 WP_008348267.1 competence protein ComFB -
  V9W60_RS16605 (V9W60_16605) comFA 3214346..3215473 (-) 1128 WP_041091472.1 DEAD/DEAH box helicase Machinery gene
  V9W60_RS16610 (V9W60_16610) - 3215845..3216687 (-) 843 WP_024719242.1 DegV family protein -
  V9W60_RS16615 (V9W60_16615) degU 3216899..3217588 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  V9W60_RS16620 (V9W60_16620) degS 3217653..3218828 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  V9W60_RS16625 (V9W60_16625) - 3219050..3219718 (+) 669 WP_335364162.1 YigZ family protein -
  V9W60_RS16630 (V9W60_16630) - 3219703..3220800 (+) 1098 WP_024719244.1 LCP family protein -
  V9W60_RS16635 (V9W60_16635) - 3220839..3221906 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=944264 V9W60_RS16615 WP_008348273.1 3216899..3217588(-) (degU) [Bacillus altitudinis strain JJ61]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=944264 V9W60_RS16615 WP_008348273.1 3216899..3217588(-) (degU) [Bacillus altitudinis strain JJ61]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATTTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996