Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   V1211_RS06365 Genome accession   NZ_CP146065
Coordinates   1252267..1252587 (+) Length   106 a.a.
NCBI ID   WP_107614543.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SPS12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247267..1257587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1211_RS06335 (V1211_06345) - 1248054..1248257 (+) 204 WP_037536577.1 YqgQ family protein -
  V1211_RS06340 (V1211_06350) - 1248254..1249240 (+) 987 WP_107612069.1 ROK family glucokinase -
  V1211_RS06345 (V1211_06355) - 1249240..1249563 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  V1211_RS06350 (V1211_06360) - 1249565..1250191 (+) 627 WP_317955339.1 MBL fold metallo-hydrolase -
  V1211_RS06355 (V1211_06365) comGA 1250243..1251217 (+) 975 WP_107612067.1 competence type IV pilus ATPase ComGA Machinery gene
  V1211_RS06360 (V1211_06370) comGB 1251189..1252253 (+) 1065 WP_233641399.1 competence type IV pilus assembly protein ComGB -
  V1211_RS06365 (V1211_06375) comGC 1252267..1252587 (+) 321 WP_107614543.1 competence type IV pilus major pilin ComGC Machinery gene
  V1211_RS06370 (V1211_06380) comGD 1252652..1253020 (+) 369 WP_326007647.1 competence type IV pilus minor pilin ComGD -
  V1211_RS06375 (V1211_06385) - 1253868..1254386 (+) 519 WP_107611601.1 shikimate kinase -
  V1211_RS06380 (V1211_06390) gcvT 1254575..1255666 (+) 1092 WP_037536557.1 glycine cleavage system aminomethyltransferase GcvT -
  V1211_RS06385 (V1211_06395) gcvPA 1255683..1257035 (+) 1353 WP_107611600.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11816.86 Da        Isoelectric Point: 8.5328

>NTDB_id=941486 V1211_RS06365 WP_107614543.1 1252267..1252587(+) (comGC) [Staphylococcus haemolyticus strain SPS12]
MKNHFENFKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=941486 V1211_RS06365 WP_107614543.1 1252267..1252587(+) (comGC) [Staphylococcus haemolyticus strain SPS12]
ATGAAGAATCACTTTGAAAATTTTAAAAAGTTAAAAGCTTTTACTTTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCTCATATCCAGTCCACAGGTTGTGAAGCCCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGAACACCTTCTAATATAAATGATCTTATCAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACAATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

82.353

96.226

0.792
  comGC Staphylococcus aureus N315

82.353

96.226

0.792
  comYC Streptococcus gordonii str. Challis substr. CH1

43

94.34

0.406
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus mitis SK321

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368