Detailed information NTG0940911

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: AAEM60_RS15080
• Genome accession: NZ_CP145886
• Coordinates: 2978383..2978979 (-)
• Length: 198 a.a.
• NCBI ID: WP_341358006.1
• Uniprot ID: -
• Organism: Rossellomorea sp. y25
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2973383..2983979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAEM60_RS15055 (V2W31_15055)	comGC	2973662..2973967 (-)	306	WP_299738365.1	competence type IV pilus major pilin ComGC	-
AAEM60_RS15060 (V2W31_15060)	comGB	2974083..2975105 (-)	1023	WP_299738368.1	competence type IV pilus assembly protein ComGB	-
AAEM60_RS15065 (V2W31_15065)	comGA	2975089..2976129 (-)	1041	WP_299738370.1	competence type IV pilus ATPase ComGA	Machinery gene
AAEM60_RS15070 (V2W31_15070)	-	2977650..2977889 (+)	240	WP_341356588.1	hypothetical protein	-
AAEM60_RS15075 (V2W31_15075)	-	2978018..2978254 (+)	237	WP_299738374.1	WGxxGxxG family protein	-
AAEM60_RS15080 (V2W31_15080)	comGA	2978383..2978979 (-)	597	WP_341358006.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
AAEM60_RS15085 (V2W31_15085)	-	2978961..2979113 (-)	153	WP_299738378.1	hypothetical protein	-
AAEM60_RS15090 (V2W31_15090)	-	2979331..2979969 (+)	639	WP_299738380.1	cupin domain-containing protein	-
AAEM60_RS15100 (V2W31_15100)	-	2980482..2980862 (-)	381	WP_299738382.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
AAEM60_RS15105 (V2W31_15105)	-	2981081..2981779 (+)	699	WP_341356589.1	helix-turn-helix domain-containing protein	-
AAEM60_RS15110 (V2W31_15110)	-	2981861..2982106 (+)	246	WP_113970494.1	DUF2626 domain-containing protein	-
AAEM60_RS15115 (V2W31_15115)	-	2982153..2982788 (-)	636	WP_341356590.1	MBL fold metallo-hydrolase	-
AAEM60_RS15120 (V2W31_15120)	-	2982994..2983167 (+)	174	WP_148969664.1	DUF2759 domain-containing protein	-
AAEM60_RS15125 (V2W31_15125)	-	2983376..2983729 (+)	354	WP_044339667.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 198 a.a.
• Molecular weight: 22077.77 Da
• Isoelectric Point: 9.6276

>NTDB_id=940911 AAEM60_RS15080 WP_341358006.1 2978383..2978979(-) (comGA) [Rossellomorea sp. y25]
MNYPFIVHERKPQSGSFSLTVRNTPLSLRISTLPTTHLKESLIIRILPQKYQIPIGKMSLYPASAKKLLALLMYSHGLIL
FTGPTGSGKTTTLYSLVHHCSAALNRNVITLEDPVEKMHEDMVQIQVNEKAGMTYSTCLKAILRHDPDIIMVGEIRDRET
EEIAIRASLTGHSVILKGPCIELNIRRNGFRGESLNSG

Nucleotide

• Length: 597 bp

>NTDB_id=940911 AAEM60_RS15080 WP_341358006.1 2978383..2978979(-) (comGA) [Rossellomorea sp. y25]
ATTAATTACCCATTTATAGTTCATGAACGAAAACCTCAAAGTGGATCCTTCAGCCTTACCGTCCGAAACACGCCCCTATC
TCTCAGAATTTCTACCTTACCAACGACTCACCTAAAAGAAAGTCTCATCATTCGAATACTCCCTCAAAAATATCAAATAC
CAATTGGAAAAATGTCACTATATCCTGCCTCGGCAAAAAAATTACTTGCACTTCTGATGTATTCCCATGGCCTCATTTTG
TTCACAGGACCGACTGGCAGTGGGAAAACAACGACTTTGTATTCCCTTGTTCATCATTGTTCGGCAGCCTTGAACCGCAA
TGTGATCACACTGGAAGATCCCGTGGAGAAGATGCATGAGGATATGGTGCAGATACAAGTGAATGAAAAAGCCGGGATGA
CGTATTCCACCTGCTTGAAAGCGATCTTACGGCACGACCCGGATATTATCATGGTGGGGGAGATCCGGGATCGGGAAACG
GAGGAGATCGCAATAAGGGCGAGCTTAACAGGTCACTCAGTCATATTAAAAGGACCATGCATAGAGTTAAATATAAGAAG
AAATGGTTTTAGGGGGGAATCACTCAACTCCGGATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (6-175)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Bacillus subtilis subsp. subtilis str. 168	61.078	84.343	0.515
comGA	Staphylococcus aureus MW2	47.305	84.343	0.399
comGA	Staphylococcus aureus N315	47.305	84.343	0.399
pilF	Neisseria gonorrhoeae MS11	43.75	88.889	0.389
pilB	Vibrio campbellii strain DS40M4	43.182	88.889	0.384
pilF	Thermus thermophilus HB27	42.69	86.364	0.369
ctsE	Campylobacter jejuni subsp. jejuni 81-176	43.452	84.848	0.369
pilB	Vibrio parahaemolyticus RIMD 2210633	41.143	88.384	0.364
pilB	Acinetobacter baumannii D1279779	41.86	86.869	0.364
pilB	Legionella pneumophila strain ERS1305867	41.86	86.869	0.364