Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AAEM60_RS15065 Genome accession   NZ_CP145886
Coordinates   2975089..2976129 (-) Length   346 a.a.
NCBI ID   WP_299738370.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2970089..2981129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS15020 (V2W31_15020) - 2970518..2971309 (+) 792 WP_299738352.1 YqhG family protein -
  AAEM60_RS15025 (V2W31_15025) - 2971392..2971571 (-) 180 WP_044340022.1 YqzE family protein -
  AAEM60_RS15030 (V2W31_15030) - 2971620..2972129 (-) 510 WP_299738356.1 shikimate kinase -
  AAEM60_RS15035 (V2W31_15035) - 2972133..2972465 (-) 333 WP_341356585.1 hypothetical protein -
  AAEM60_RS15040 (V2W31_15040) comGF 2972482..2972985 (-) 504 WP_341356586.1 competence type IV pilus minor pilin ComGF -
  AAEM60_RS15045 (V2W31_15045) - 2972912..2973238 (-) 327 WP_341356587.1 hypothetical protein -
  AAEM60_RS15050 (V2W31_15050) comGD 2973222..2973662 (-) 441 WP_299738363.1 competence type IV pilus minor pilin ComGD -
  AAEM60_RS15055 (V2W31_15055) comGC 2973662..2973967 (-) 306 WP_299738365.1 competence type IV pilus major pilin ComGC -
  AAEM60_RS15060 (V2W31_15060) comGB 2974083..2975105 (-) 1023 WP_299738368.1 competence type IV pilus assembly protein ComGB -
  AAEM60_RS15065 (V2W31_15065) comGA 2975089..2976129 (-) 1041 WP_299738370.1 competence type IV pilus ATPase ComGA Machinery gene
  AAEM60_RS15070 (V2W31_15070) - 2977650..2977889 (+) 240 WP_341356588.1 hypothetical protein -
  AAEM60_RS15075 (V2W31_15075) - 2978018..2978254 (+) 237 WP_299738374.1 WGxxGxxG family protein -
  AAEM60_RS15080 (V2W31_15080) comGA 2978383..2978979 (-) 597 WP_341358006.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  AAEM60_RS15085 (V2W31_15085) - 2978961..2979113 (-) 153 WP_299738378.1 hypothetical protein -
  AAEM60_RS15090 (V2W31_15090) - 2979331..2979969 (+) 639 WP_299738380.1 cupin domain-containing protein -
  AAEM60_RS15100 (V2W31_15100) - 2980482..2980862 (-) 381 WP_299738382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38812.26 Da        Isoelectric Point: 9.2262

>NTDB_id=940910 AAEM60_RS15065 WP_299738370.1 2975089..2976129(-) (comGA) [Rossellomorea sp. y25]
MIGEAFSSEATDIHLIPRTKDYLIQFRKLGALVPFQTIDSDQAERLIAHLKFMASMDIGEKRKPQSGSFSLTVRNTPLSL
RISTLPTTHLKESLVIRILPQKYQIPIEKMSLYPSSAKKLLALLMYSHGLILFTGPTGSGKTTTLYSLVHHCSAALNRNV
ITLEDPVEKMHEDMVQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDRETAEIAIRASLTGHLVISTMHTRDAKGAIY
RLMELGIEWHDIEQTLLAVSAQRLLKLVCPLCKAECGGKCHRGKNLHMASVYEIVTGSALKEVLKEAKGERAQHQYHTLQ
TLINKGVALGFVSELEYRKWVHEEKR

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=940910 AAEM60_RS15065 WP_299738370.1 2975089..2976129(-) (comGA) [Rossellomorea sp. y25]
ATGATTGGAGAAGCTTTCAGCAGTGAAGCAACAGATATTCATTTAATACCCAGAACCAAAGATTACTTGATTCAATTCAG
GAAGCTGGGAGCATTGGTTCCATTCCAGACCATTGACTCAGATCAGGCAGAACGATTAATTGCCCATTTAAAGTTCATGG
CCTCCATGGACATTGGAGAAAAGCGAAAACCTCAAAGTGGATCCTTCAGCCTTACCGTCCGAAACACACCCCTATCTCTC
AGAATTTCTACCTTACCAACGACTCATTTAAAAGAAAGTCTCGTCATTCGAATACTCCCTCAAAAATATCAAATACCAAT
TGAAAAAATGTCACTATATCCTTCCTCGGCAAAAAAATTACTTGCTCTTCTGATGTATTCCCATGGTCTCATTTTGTTCA
CAGGACCGACTGGCAGTGGGAAAACAACGACTTTGTATTCCCTTGTTCATCATTGTTCGGCAGCCTTGAACCGTAATGTG
ATCACACTGGAAGATCCCGTGGAGAAGATGCATGAGGATATGGTGCAGATACAAGTGAATGAAAAAGCCGGGATAACGTA
TTCCACCGGCTTGAAAGCGATTTTACGGCACGACCCGGATATTATCATGGTGGGGGAGATCCGGGATCGGGAAACGGCGG
AGATTGCAATAAGGGCGAGCTTAACAGGTCACTTGGTAATTTCTACGATGCATACGAGAGATGCAAAAGGGGCGATCTAT
CGTTTAATGGAATTAGGAATTGAGTGGCATGACATTGAACAGACACTGCTGGCCGTTTCAGCCCAGAGATTGCTAAAGTT
AGTATGTCCGCTTTGCAAAGCAGAGTGTGGTGGGAAATGCCATCGAGGAAAAAATCTGCACATGGCATCGGTATATGAAA
TTGTAACTGGAAGTGCTTTGAAGGAGGTGCTGAAAGAGGCGAAAGGTGAAAGAGCACAACATCAGTACCACACACTTCAG
ACGCTAATCAATAAGGGGGTGGCACTAGGATTTGTTTCGGAACTTGAATATAGGAAATGGGTTCATGAAGAAAAGCGATG
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(2-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.755

100

0.549