Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6U69_RS09900 Genome accession   NZ_CP145867
Coordinates   2122406..2123671 (-) Length   421 a.a.
NCBI ID   WP_410533800.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2117406..2128671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS09890 (V6U69_09880) spx 2120660..2121058 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  V6U69_RS09895 (V6U69_09885) recA 2121226..2122365 (-) 1140 WP_002889600.1 recombinase RecA Machinery gene
  V6U69_RS09900 (V6U69_09890) cinA 2122406..2123671 (-) 1266 WP_410533800.1 competence/damage-inducible protein A Machinery gene
  V6U69_RS09905 (V6U69_09895) - 2123768..2124322 (-) 555 WP_073951167.1 DNA-3-methyladenine glycosylase I -
  V6U69_RS09910 (V6U69_09900) ruvA 2124331..2124921 (-) 591 WP_013989915.1 Holliday junction branch migration protein RuvA -
  V6U69_RS09915 (V6U69_09905) - 2125079..2125300 (-) 222 WP_410533802.1 hypothetical protein -
  V6U69_RS09920 (V6U69_09910) mutL 2125431..2127368 (-) 1938 WP_410533804.1 DNA mismatch repair endonuclease MutL -
  V6U69_RS09925 (V6U69_09915) - 2127420..2127725 (-) 306 WP_410533806.1 hypothetical protein -
  V6U69_RS09930 (V6U69_09920) - 2127904..2128341 (+) 438 WP_410533808.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45613.88 Da        Isoelectric Point: 5.9567

>NTDB_id=940814 V6U69_RS09900 WP_410533800.1 2122406..2123671(-) (cinA) [Streptococcus salivarius strain KSS10]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLEQASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKKLVFDEEASKKLDSFFATRLKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGVITTQGVTYVVLPGPPSELKPM
VNQELVPALTENHASLYSRVLRFFGVGESQLVTILKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSREEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFETFRLLKNHGKTITAAESLTAGLFQASIADFSGASQVLKGGFVTYSIEEKSKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQETT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=940814 V6U69_RS09900 WP_410533800.1 2122406..2123671(-) (cinA) [Streptococcus salivarius strain KSS10]
ATGAAAGCTGAATTGATTGCAGTAGGAACCGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATCGATGTGTATTTTCACACAGCAGTAGGAGACAATGAAAACCGCCTACTCTCAGTTCTAG
AACAAGCTAGTAAACGTAGTGACTTAGTCATACTTTGTGGTGGACTTGGCCCTACGGAGGACGATTTAACCAAGCAAACC
CTAGCTAAGTTCTTAGGAAAAAAACTTGTTTTTGATGAGGAGGCAAGTAAAAAGCTGGACAGTTTCTTTGCTACTCGCCT
TAAACACACACGAACGCCTAATAATGAACGTCAAGCGCAAATTGTTGAGGGGGCTATCCCCTTGCAAAATCCTACAGGTC
TTGCAGTTGGAGGCGTCATTACTACTCAAGGGGTGACCTATGTAGTCCTACCTGGGCCACCAAGTGAACTTAAACCTATG
GTGAATCAGGAACTTGTTCCAGCACTTACTGAGAATCACGCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTGGTGACTATTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCACGAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCTACTAAAACTCTAGATGGCAAATCCTTATCTGATTTTATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAACTTTCCGTTTGCTTAAGAACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTATTAAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCCTTATTACAAGAGACAACTTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(264-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.463

99.525

0.741
  cinA Streptococcus mitis NCTC 12261

73.747

99.525

0.734
  cinA Streptococcus pneumoniae TIGR4

73.508

99.525

0.732
  cinA Streptococcus pneumoniae Rx1

73.27

99.525

0.729
  cinA Streptococcus pneumoniae R6

73.27

99.525

0.729
  cinA Streptococcus pneumoniae D39

73.031

99.525

0.727
  cinA Streptococcus mutans UA159

70.504

99.05

0.698
  cinA Streptococcus suis isolate S10

55.048

98.812

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

100

0.449