Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   V6U68_RS09415 Genome accession   NZ_CP145866
Coordinates   2015689..2016789 (-) Length   366 a.a.
NCBI ID   WP_410531677.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010689..2021789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS09375 (V6U68_09355) - 2011298..2011495 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  V6U68_RS09380 (V6U68_09360) - 2011746..2012939 (-) 1194 WP_003095894.1 acetate kinase -
  V6U68_RS09385 (V6U68_09365) comYH 2012996..2013952 (-) 957 WP_037601477.1 class I SAM-dependent methyltransferase Machinery gene
  V6U68_RS09390 (V6U68_09370) comGG 2013997..2014314 (-) 318 WP_041817287.1 competence type IV pilus minor pilin ComGG -
  V6U68_RS09395 (V6U68_09375) comYF 2014292..2014729 (-) 438 WP_080611747.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6U68_RS09400 (V6U68_09380) comGE 2014716..2015006 (-) 291 WP_195435963.1 competence type IV pilus minor pilin ComGE -
  V6U68_RS09405 (V6U68_09385) comYD 2014978..2015406 (-) 429 WP_267472584.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6U68_RS09410 (V6U68_09390) comYC 2015366..2015692 (-) 327 WP_002885815.1 competence type IV pilus major pilin ComGC Machinery gene
  V6U68_RS09415 (V6U68_09395) comYB 2015689..2016789 (-) 1101 WP_410531677.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6U68_RS09420 (V6U68_09400) comYA 2016671..2017612 (-) 942 WP_201041167.1 competence type IV pilus ATPase ComGA Machinery gene
  V6U68_RS09425 (V6U68_09405) - 2017692..2018054 (-) 363 WP_073949471.1 DUF1033 family protein -
  V6U68_RS09430 (V6U68_09410) - 2018266..2019515 (+) 1250 Protein_1801 ISL3 family transposase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41662.68 Da        Isoelectric Point: 10.0357

>NTDB_id=940747 V6U68_RS09415 WP_410531677.1 2015689..2016789(-) (comYB) [Streptococcus salivarius strain KSS9]
MPVKISKAIRQPAGTNSWKAWFNKDISLKGISKGKKLKINQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKDNWAVQLVQIFPQLFFVSLCGLLVLSLILYLWVKHQPALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVSLMQEQKSKLFRELGADLEEALMLGQSFPDRIATHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=940747 V6U68_RS09415 WP_410531677.1 2015689..2016789(-) (comYB) [Streptococcus salivarius strain KSS9]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAGCTGGAACCAACAGTTGGAAGGCTTGGTTCAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAAGTCAAGGTTATCCAGCTTTTCAAACAACTTCTAA
AGGCAGGGTTTACTTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCATTTGTTGAAAGAATCGTCATTATCTCTTATG
AAAGCAAGCTTAATGCGAGGCGACAGGCTAGACCAGATGTTTGCATCAGTGGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGCATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTACCCTATTCTACTCCTGGGTTTCCTGATTCTGATTATGTTAGGACTTAAAAAT
TATCTTTTACCTCAACTGTTAGAGGGTGATGGTAAGGATAATTGGGCTGTACAGTTGGTTCAAATCTTTCCCCAGCTCTT
CTTTGTGAGTTTGTGTGGACTTCTTGTATTAAGCTTAATTCTTTATCTATGGGTCAAACACCAGCCAGCTCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTCATAGGCCAAACTGTCAGGCTATATACGACCGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGACAAGGCATTGACCTGTTAGACTTGGTTTCTCTTATGCAAGAGCAAAAGTCCAAGCTCTTTCGTGAGCT
GGGGGCTGATTTAGAAGAGGCCTTGATGCTAGGACAGAGTTTTCCTGACCGAATTGCTACTCACCCATTTTTCACTAAGG
AGCTATCCTTAATTATTGCTTATGGAGAGGCCAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCTATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.102

93.716

0.516
  comYB Streptococcus mutans UA159

55.102

93.716

0.516
  comYB Streptococcus gordonii str. Challis substr. CH1

51.02

93.716

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.144

94.809

0.475
  comGB/cglB Streptococcus mitis SK321

49.704

92.35

0.459
  comGB/cglB Streptococcus pneumoniae Rx1

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae D39

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae R6

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae TIGR4

49.408

92.35

0.456
  comGB Lactococcus lactis subsp. cremoris KW2

45.646

90.984

0.415