Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ABUS46_RS01745 Genome accession   NZ_CP169798
Coordinates   371670..372233 (+) Length   187 a.a.
NCBI ID   WP_031961383.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv781     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366670..377233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS46_RS01735 - 366875..367564 (+) 690 WP_079281925.1 pilus assembly protein PilX -
  ABUS46_RS01740 - 367590..371660 (+) 4071 WP_031961384.1 PilC/PilY family type IV pilus protein -
  ABUS46_RS01745 comE 371670..372233 (+) 564 WP_031961383.1 type IV pilin protein Machinery gene
  ABUS46_RS01750 pilE 372233..372655 (+) 423 WP_031961381.1 type IV pilin protein Machinery gene
  ABUS46_RS01755 rpsP 372802..373053 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS46_RS01760 rimM 373073..373621 (+) 549 WP_031961380.1 ribosome maturation factor RimM -
  ABUS46_RS01765 trmD 373667..374407 (+) 741 WP_031961379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS46_RS01770 rplS 374615..374983 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS46_RS01775 - 375037..375978 (-) 942 WP_104131029.1 triacylglycerol lipase -
  ABUS46_RS01780 - 376093..377127 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20604.52 Da        Isoelectric Point: 8.3938

>NTDB_id=940744 ABUS46_RS01745 WP_031961383.1 371670..372233(+) (comE) [Acinetobacter baumannii strain Hv781]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW

Nucleotide


Download         Length: 564 bp        

>NTDB_id=940744 ABUS46_RS01745 WP_031961383.1 371670..372233(+) (comE) [Acinetobacter baumannii strain Hv781]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGATTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.85

100

0.439