Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   V6U68_RS07205 Genome accession   NZ_CP145866
Coordinates   1587906..1589876 (-) Length   656 a.a.
NCBI ID   WP_037598293.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582906..1594876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07185 (V6U68_07165) amiF 1583409..1584338 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U68_RS07190 (V6U68_07170) amiE 1584331..1585416 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS07195 (V6U68_07175) amiD 1585426..1586352 (-) 927 WP_073689251.1 oligopeptide ABC transporter permease OppC Regulator
  V6U68_RS07200 (V6U68_07180) amiC 1586352..1587845 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  V6U68_RS07205 (V6U68_07185) amiA3 1587906..1589876 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator
  V6U68_RS07210 (V6U68_07190) amiA 1590058..1592028 (-) 1971 WP_048673701.1 peptide ABC transporter substrate-binding protein Regulator
  V6U68_RS07215 (V6U68_07195) pta 1592265..1593248 (-) 984 WP_410531527.1 phosphate acetyltransferase -
  V6U68_RS07220 (V6U68_07200) - 1593264..1594160 (-) 897 WP_175063796.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72953.30 Da        Isoelectric Point: 5.0663

>NTDB_id=940729 V6U68_RS07205 WP_037598293.1 1587906..1589876(-) (amiA3) [Streptococcus salivarius strain KSS9]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTFNYVYNADPETLDYLISNKGSTIDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHYDGVKLSFFDGSDQEAQVRNFTDGAYSQARIYPTGSNFASVKKQYKDNIFYTQPSADIVGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSINFSINRESYSAQINGEEGGVLAVRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDMPVDQTAKTKVARAQSLKQSVEETLGKENVVVDLNQMSQDDLLN
ATLSAPNAAAEDWDITDSVAWAPDYEDPSTYLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVENAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940729 V6U68_RS07205 WP_037598293.1 1587906..1589876(-) (amiA3) [Streptococcus salivarius strain KSS9]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCGTCAAAATC
AAACACTTCAAGCAATACTTTTAACTATGTTTATAATGCTGATCCTGAGACATTGGACTACCTTATTTCCAATAAGGGTT
CAACAATTGATGCTGTGACAAATGGTGTCGATGGTCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTAACTTATACATACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTTAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTATGATGGGGTGAAATTGTCATTTTTCGATGGCTCTGATCAAGAGGCTCAAGTCCGTAATTTCACTGATGG
CGCCTATAGCCAAGCACGTATTTATCCAACAGGGTCGAACTTCGCCTCAGTAAAAAAACAATATAAAGATAATATTTTCT
ATACACAACCATCTGCTGATATTGTTGGTGTTGGTGTTAATATTGATCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGCCAATCTATTAACTTCTCAATTAATCGTGA
GTCATACTCAGCTCAAATTAATGGAGAAGAAGGGGGAGTTCTAGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGGCTTCTTACGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAACAAGGCTAAGGAAGCCCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTAGATATGCCAGTTGACCAAACAGCAAAGACAAAGGTGGCTCGTGCACAGTCTTTGA
AACAATCTGTTGAAGAGACACTCGGTAAAGAAAATGTTGTGGTTGACCTCAACCAAATGTCTCAAGATGACCTGTTGAAC
GCAACTCTTTCTGCTCCTAATGCAGCAGCAGAAGACTGGGATATTACTGACTCAGTTGCTTGGGCACCTGACTATGAAGA
CCCATCAACATACCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAATA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGAAAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTCAACAAGGG
GGCTGCGCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGCGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

74.125

100

0.742
  amiA3 Streptococcus thermophilus LMG 18311

73.973

100

0.741
  amiA Streptococcus salivarius strain HSISS4

73.78

100

0.738