Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   V6U68_RS07190 Genome accession   NZ_CP145866
Coordinates   1584331..1585416 (-) Length   361 a.a.
NCBI ID   WP_049554143.1    Uniprot ID   A0AB37DBK0
Organism   Streptococcus salivarius strain KSS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1579331..1590416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07160 (V6U68_07140) - 1579694..1580512 (-) 819 WP_410531524.1 Cof-type HAD-IIB family hydrolase -
  V6U68_RS07165 (V6U68_07145) - 1580505..1581299 (-) 795 WP_410531525.1 HAD-IIB family hydrolase -
  V6U68_RS07170 (V6U68_07150) - 1581481..1581858 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  V6U68_RS07175 (V6U68_07155) - 1581863..1582561 (+) 699 WP_037601748.1 ABC transporter ATP-binding protein -
  V6U68_RS07180 (V6U68_07160) - 1582573..1583358 (+) 786 WP_037601745.1 hypothetical protein -
  V6U68_RS07185 (V6U68_07165) amiF 1583409..1584338 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U68_RS07190 (V6U68_07170) amiE 1584331..1585416 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS07195 (V6U68_07175) amiD 1585426..1586352 (-) 927 WP_073689251.1 oligopeptide ABC transporter permease OppC Regulator
  V6U68_RS07200 (V6U68_07180) amiC 1586352..1587845 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  V6U68_RS07205 (V6U68_07185) amiA3 1587906..1589876 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39876.52 Da        Isoelectric Point: 4.6482

>NTDB_id=940726 V6U68_RS07190 WP_049554143.1 1584331..1585416(-) (amiE) [Streptococcus salivarius strain KSS9]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVASGSIDYRGQDL
TKLKSHQDWASIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACHPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=940726 V6U68_RS07190 WP_049554143.1 1584331..1585416(-) (amiE) [Streptococcus salivarius strain KSS9]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
CATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACTAAGACTTTCACAGGGATGCTTGAAGATAATGGTCGTGTCGCTAGTGGTTCGATTGATTATCGCGGTCAAGATTTG
ACTAAGCTTAAGAGTCACCAAGATTGGGCATCTATTCGTGGGGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAATGAGTATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCATCCGGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTCGATGTGACCATTCAAGCTCAAATCATCGACCTCTTGAAATCACTCAAAGAGGAGTACGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGATAAGGTTGCTGTTATGTATGCTGGTGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
CGATGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAGATTGACTTCGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.169

100

0.992

  amiE Streptococcus thermophilus LMG 18311

96.399

100

0.964

  amiE Streptococcus thermophilus LMD-9

96.399

100

0.964

  oppD Streptococcus mutans UA159

54.441

96.676

0.526