Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6U68_RS07195 Genome accession   NZ_CP145866
Coordinates   1585426..1586352 (-) Length   308 a.a.
NCBI ID   WP_073689251.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580426..1591352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07165 (V6U68_07145) - 1580505..1581299 (-) 795 WP_410531525.1 HAD-IIB family hydrolase -
  V6U68_RS07170 (V6U68_07150) - 1581481..1581858 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  V6U68_RS07175 (V6U68_07155) - 1581863..1582561 (+) 699 WP_037601748.1 ABC transporter ATP-binding protein -
  V6U68_RS07180 (V6U68_07160) - 1582573..1583358 (+) 786 WP_037601745.1 hypothetical protein -
  V6U68_RS07185 (V6U68_07165) amiF 1583409..1584338 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U68_RS07190 (V6U68_07170) amiE 1584331..1585416 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS07195 (V6U68_07175) amiD 1585426..1586352 (-) 927 WP_073689251.1 oligopeptide ABC transporter permease OppC Regulator
  V6U68_RS07200 (V6U68_07180) amiC 1586352..1587845 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  V6U68_RS07205 (V6U68_07185) amiA3 1587906..1589876 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34635.78 Da        Isoelectric Point: 9.7054

>NTDB_id=940727 V6U68_RS07195 WP_073689251.1 1585426..1586352(-) (amiD) [Streptococcus salivarius strain KSS9]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLIVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=940727 V6U68_RS07195 WP_073689251.1 1585426..1586352(-) (amiD) [Streptococcus salivarius strain KSS9]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAGAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGTTTTATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTGCATCCAAACGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCCCTCTTCGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGATTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTTACAGGGTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTATAACTTGGCTTCTCGTACACTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAACATCATGCCACAACTAGTGTCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTAGGGCTTCCTGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.026

100

0.99
  amiD Streptococcus thermophilus LMG 18311

96.429

100

0.964
  amiD Streptococcus thermophilus LMD-9

96.429

100

0.964