Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V6U68_RS07200 Genome accession   NZ_CP145866
Coordinates   1586352..1587845 (-) Length   497 a.a.
NCBI ID   WP_038676511.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581352..1592845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07170 (V6U68_07150) - 1581481..1581858 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  V6U68_RS07175 (V6U68_07155) - 1581863..1582561 (+) 699 WP_037601748.1 ABC transporter ATP-binding protein -
  V6U68_RS07180 (V6U68_07160) - 1582573..1583358 (+) 786 WP_037601745.1 hypothetical protein -
  V6U68_RS07185 (V6U68_07165) amiF 1583409..1584338 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U68_RS07190 (V6U68_07170) amiE 1584331..1585416 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS07195 (V6U68_07175) amiD 1585426..1586352 (-) 927 WP_073689251.1 oligopeptide ABC transporter permease OppC Regulator
  V6U68_RS07200 (V6U68_07180) amiC 1586352..1587845 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  V6U68_RS07205 (V6U68_07185) amiA3 1587906..1589876 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator
  V6U68_RS07210 (V6U68_07190) amiA 1590058..1592028 (-) 1971 WP_048673701.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55859.62 Da        Isoelectric Point: 10.0104

>NTDB_id=940728 V6U68_RS07200 WP_038676511.1 1586352..1587845(-) (amiC) [Streptococcus salivarius strain KSS9]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=940728 V6U68_RS07200 WP_038676511.1 1586352..1587845(-) (amiC) [Streptococcus salivarius strain KSS9]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTACTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATACTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTTAAGATGAACCTTGGTACATCTTACCCAACCTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGTCAAGGACAAACACAAAGTTCTGAGGTCAACTTCCCTACTGGTAAGAAGGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCGACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCGTACATGGCACGCTTTAAAAATACCCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAACGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

99.195

100

0.992
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974