Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U68_RS07210 Genome accession   NZ_CP145866
Coordinates   1590058..1592028 (-) Length   656 a.a.
NCBI ID   WP_048673701.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585058..1597028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07195 (V6U68_07175) amiD 1585426..1586352 (-) 927 WP_073689251.1 oligopeptide ABC transporter permease OppC Regulator
  V6U68_RS07200 (V6U68_07180) amiC 1586352..1587845 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  V6U68_RS07205 (V6U68_07185) amiA3 1587906..1589876 (-) 1971 WP_037598293.1 peptide ABC transporter substrate-binding protein Regulator
  V6U68_RS07210 (V6U68_07190) amiA 1590058..1592028 (-) 1971 WP_048673701.1 peptide ABC transporter substrate-binding protein Regulator
  V6U68_RS07215 (V6U68_07195) pta 1592265..1593248 (-) 984 WP_410531527.1 phosphate acetyltransferase -
  V6U68_RS07220 (V6U68_07200) - 1593264..1594160 (-) 897 WP_175063796.1 RluA family pseudouridine synthase -
  V6U68_RS07225 (V6U68_07205) - 1594157..1594993 (-) 837 WP_002884507.1 NAD kinase -
  V6U68_RS07230 (V6U68_07210) - 1594965..1595639 (-) 675 WP_073689255.1 GTP pyrophosphokinase family protein -
  V6U68_RS07235 (V6U68_07215) - 1595735..1596310 (+) 576 WP_002886838.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71943.67 Da        Isoelectric Point: 4.8199

>NTDB_id=940730 V6U68_RS07210 WP_048673701.1 1590058..1592028(-) (amiA) [Streptococcus salivarius strain KSS9]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFILKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYASVEKNYKDNIYYTAPGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKETLQADGVQFPIHLDLPVDQSSKINVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDIQN
ATLNAANAAAEDWDISNGVIWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940730 V6U68_RS07210 WP_048673701.1 1590058..1592028(-) (amiA) [Streptococcus salivarius strain KSS9]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTCGCCCTTCTAAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGACCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACTAAGACAGCTGTGACAAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAGTTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGTAAGTCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCGGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCATTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGTTCTAACTATGCTTCAGTTGAGAAAAACTATAAAGATAATATTTATT
ACACAGCACCAGGTGCATCTACATCGGCTATTGGTGTGAATATTGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTAAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGAAACTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAAGTTCTAAAATCAATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAGCAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTATCATCTGATGACATACAAAAT
GCAACCCTTAACGCGGCTAATGCAGCGGCAGAAGACTGGGATATTTCAAACGGTGTCATTTGGGGTCCAGACTATCAAGA
CCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCAGCAGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCCTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCATGGTTGGAAGATAGCTCTCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATGCAGGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

99.238

100

0.992
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904