Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V6U68_RS07185 Genome accession   NZ_CP145866
Coordinates   1583409..1584338 (-) Length   309 a.a.
NCBI ID   WP_021143812.1    Uniprot ID   A0AAX2V221
Organism   Streptococcus salivarius strain KSS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578409..1589338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07160 (V6U68_07140) - 1579694..1580512 (-) 819 WP_410531524.1 Cof-type HAD-IIB family hydrolase -
  V6U68_RS07165 (V6U68_07145) - 1580505..1581299 (-) 795 WP_410531525.1 HAD-IIB family hydrolase -
  V6U68_RS07170 (V6U68_07150) - 1581481..1581858 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  V6U68_RS07175 (V6U68_07155) - 1581863..1582561 (+) 699 WP_037601748.1 ABC transporter ATP-binding protein -
  V6U68_RS07180 (V6U68_07160) - 1582573..1583358 (+) 786 WP_037601745.1 hypothetical protein -
  V6U68_RS07185 (V6U68_07165) amiF 1583409..1584338 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U68_RS07190 (V6U68_07170) amiE 1584331..1585416 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS07195 (V6U68_07175) amiD 1585426..1586352 (-) 927 WP_073689251.1 oligopeptide ABC transporter permease OppC Regulator
  V6U68_RS07200 (V6U68_07180) amiC 1586352..1587845 (-) 1494 WP_038676511.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35005.11 Da        Isoelectric Point: 6.8971

>NTDB_id=940725 V6U68_RS07185 WP_021143812.1 1583409..1584338(-) (amiF) [Streptococcus salivarius strain KSS9]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=940725 V6U68_RS07185 WP_021143812.1 1583409..1584338(-) (amiF) [Streptococcus salivarius strain KSS9]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATTGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCGGACTTGGTCATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACTTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTTATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTCGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

100

100

1
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977