Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6U68_RS00360 Genome accession   NZ_CP145866
Coordinates   59687..60952 (+) Length   421 a.a.
NCBI ID   WP_410531710.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54687..65952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS00330 (V6U68_00330) - 55017..55454 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  V6U68_RS00335 (V6U68_00335) - 55633..55938 (+) 306 WP_155198552.1 hypothetical protein -
  V6U68_RS00340 (V6U68_00340) mutL 55990..57927 (+) 1938 WP_155198551.1 DNA mismatch repair endonuclease MutL -
  V6U68_RS00345 (V6U68_00345) - 58058..58279 (+) 222 WP_037597288.1 hypothetical protein -
  V6U68_RS00350 (V6U68_00350) ruvA 58437..59027 (+) 591 WP_037599413.1 Holliday junction branch migration protein RuvA -
  V6U68_RS00355 (V6U68_00355) - 59036..59590 (+) 555 WP_037599412.1 DNA-3-methyladenine glycosylase I -
  V6U68_RS00360 (V6U68_00360) cinA 59687..60952 (+) 1266 WP_410531710.1 competence/damage-inducible protein A Machinery gene
  V6U68_RS00365 (V6U68_00365) recA 60993..62132 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  V6U68_RS00370 (V6U68_00370) spx 62302..62700 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45678.95 Da        Isoelectric Point: 6.4051

>NTDB_id=940685 V6U68_RS00360 WP_410531710.1 59687..60952(+) (cinA) [Streptococcus salivarius strain KSS9]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKKLVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGVITTQGVTYVVLPGPPSELKPM
VNQELVPALTENHASLYSRVLRFFGVGESQLVTILKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSREEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFETFRLFKNHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKSKM
LDIPLSQLEKHGVVSHFTAEKMAEGVRAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQETT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=940685 V6U68_RS00360 WP_410531710.1 59687..60952(+) (cinA) [Streptococcus salivarius strain KSS9]
ATGAAAGCTGAATTGATTGCAGTAGGAACCGAAATCCTAACTGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGACAATGAAAACCGCCTACTCTCAGTTCTAG
ACCAAGCTAGTAAACGTAGTGACTTAGTCATACTTTGTGGAGGACTTGGCCCTACGGAGGACGATTTAACCAAGCAAACC
CTAGCTAAGTTCTTAGGAAAAAAACTTGTTTTTGATGAGGAGGCAAGTAAAAAGCTGGACAGTTTCTTTGCTACTCGCCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCGCAAATTGTTGAGGGGGCTATCCCCTTGCAAAATCCTACAGGTC
TTGCAGTTGGAGGCGTCATTACTACTCAAGGGGTGACCTATGTAGTCCTACCTGGGCCACCAAGTGAACTTAAACCTATG
GTGAATCAGGAACTTGTTCCAGCACTTACTGAGAATCACGCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTGGTGACTATTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCACGAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCTACTAAAACTCTAGATGGCAAATCCTTATCTGATTTTATTTACGGATATGGAGAGTCTAATAGTTTAGCATT
TGAAACTTTCCGTTTGTTTAAGAACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTATTTAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAAAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGTCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGAGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGACGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAGACAACTTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(264-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

73.986

99.525

0.736
  cinA Streptococcus mitis NCTC 12261

73.27

99.525

0.729
  cinA Streptococcus pneumoniae TIGR4

73.031

99.525

0.727
  cinA Streptococcus pneumoniae Rx1

72.792

99.525

0.724
  cinA Streptococcus pneumoniae R6

72.792

99.525

0.724
  cinA Streptococcus pneumoniae D39

72.554

99.525

0.722
  cinA Streptococcus mutans UA159

70.743

99.05

0.701
  cinA Streptococcus suis isolate S10

55.048

98.812

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

45.368

100

0.454