Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6U66_RS04870 Genome accession   NZ_CP145864
Coordinates   1080304..1081143 (+) Length   279 a.a.
NCBI ID   WP_004182435.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1075304..1086143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS04840 (V6U66_04825) - 1075721..1076248 (+) 528 WP_002883896.1 ECF transporter S component -
  V6U66_RS04845 (V6U66_04830) - 1076271..1076786 (+) 516 WP_004182431.1 transcription repressor NadR -
  V6U66_RS04850 (V6U66_04835) - 1076881..1077570 (+) 690 WP_045772410.1 XRE family transcriptional regulator -
  V6U66_RS04855 (V6U66_04840) ylqF 1077699..1078553 (+) 855 WP_045768650.1 ribosome biogenesis GTPase YlqF -
  V6U66_RS04860 (V6U66_04845) - 1078540..1079310 (+) 771 WP_045768651.1 ribonuclease HII -
  V6U66_RS04865 (V6U66_04850) - 1079317..1080237 (+) 921 WP_004182434.1 ROK family protein -
  V6U66_RS04870 (V6U66_04855) dprA 1080304..1081143 (+) 840 WP_004182435.1 DNA-processing protein DprA Machinery gene
  V6U66_RS04875 (V6U66_04860) topA 1081311..1083455 (+) 2145 WP_004182436.1 type I DNA topoisomerase -
  V6U66_RS04880 (V6U66_04865) - 1083638..1084312 (+) 675 WP_004182437.1 ABC transporter ATP-binding protein -
  V6U66_RS04885 (V6U66_04870) - 1084317..1085045 (+) 729 WP_004182438.1 hypothetical protein -
  V6U66_RS04890 (V6U66_04875) - 1085032..1085679 (+) 648 WP_004182439.1 nisG -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31233.16 Da        Isoelectric Point: 8.1468

>NTDB_id=940582 V6U66_RS04870 WP_004182435.1 1080304..1081143(+) (dprA) [Streptococcus salivarius strain KSS7]
MNNFELFKLKAAGLTNLNILNILDYQKTQDRKLSLRDMAVVSKSKNAVLFMEKYKSLDIKQLKEQFDHFPTLSIFDKEYP
IELKYTYNPPVLLYYQGNLDLLSKPKLAVVGARKCSETGKQSVRKIVSELGNHFTIVSGLACGIDTCAHMEALKNKGNTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLTEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=940582 V6U66_RS04870 WP_004182435.1 1080304..1081143(+) (dprA) [Streptococcus salivarius strain KSS7]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTAAATATCTTAAATATTTTGGACTATCAAAA
GACTCAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCCGTTCTTTTTATGGAAAAGT
ATAAGAGTTTAGATATTAAGCAACTCAAAGAACAATTCGACCATTTTCCTACGTTATCGATTTTTGATAAAGAATATCCC
ATTGAGCTGAAGTATACCTATAATCCTCCTGTCCTCCTTTATTATCAGGGGAATCTTGATTTACTGAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGTTCTGAAACAGGCAAACAGTCTGTCCGTAAAATTGTTAGTGAACTTGGGAATCACT
TTACTATTGTGAGTGGATTGGCGTGTGGGATTGATACTTGTGCGCATATGGAGGCCTTGAAAAATAAGGGGAACACGATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGACTATATGGCAAAAAATCATTT
AGTTCTTACAGAATATGGACCAGGTGAACAGCCTCTCAAGTACCACTTTCCTGAACGCAATCGGATTATTTCTGGATTGT
GTCAAGGAGTTATGGTTGTAGAAGCTAAGCTTCGCTCAGGAAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGATGGATGCCATCACCTAATTCAGGAGGGTGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

71.326

100

0.713
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis SK321

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

62.95

99.642

0.627
  dprA Lactococcus lactis subsp. cremoris KW2

59.712

99.642

0.595
  dprA Latilactobacillus sakei subsp. sakei 23K

40.613

93.548

0.38
  dprA Acinetobacter baumannii D1279779

45.575

81.004

0.369
  dprA Acinetobacter baumannii strain A118

45.575

81.004

0.369
  dprA Bacillus subtilis subsp. subtilis str. 168

48.095

75.269

0.362