Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U66_RS03225 Genome accession   NZ_CP145864
Coordinates   618334..620304 (+) Length   656 a.a.
NCBI ID   WP_013990224.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 613334..625304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS03210 (V6U66_03210) - 614051..614947 (+) 897 WP_060972659.1 RluA family pseudouridine synthase -
  V6U66_RS03215 (V6U66_03215) pta 614963..615946 (+) 984 WP_410534574.1 phosphate acetyltransferase -
  V6U66_RS03220 (V6U66_03220) amiA 616183..618153 (+) 1971 WP_048673701.1 peptide ABC transporter substrate-binding protein Regulator
  V6U66_RS03225 (V6U66_03225) amiA 618334..620304 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  V6U66_RS03230 (V6U66_03230) amiC 620365..621858 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V6U66_RS03235 (V6U66_03235) amiD 621858..622784 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U66_RS03240 (V6U66_03240) amiE 622794..623879 (+) 1086 WP_037601740.1 ABC transporter ATP-binding protein Regulator
  V6U66_RS03245 (V6U66_03245) amiF 623872..624801 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72935.32 Da        Isoelectric Point: 5.2837

>NTDB_id=940571 V6U66_RS03225 WP_013990224.1 618334..620304(+) (amiA) [Streptococcus salivarius strain KSS7]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940571 V6U66_RS03225 WP_013990224.1 618334..620304(+) (amiA) [Streptococcus salivarius strain KSS7]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGATTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAAGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGATTTTTCTAAAGTCGGCGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTATTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTATGATGCATCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGTCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCTGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCACTTGCTGTTCGTAACCTTCTTGTTAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAATGCTGATAAGGCTAAGACTGAATTTAATAAAGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAATGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCACCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTCGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGATAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.457

100

0.755
  amiA3 Streptococcus thermophilus LMG 18311

75.19

100

0.753
  amiA3 Streptococcus thermophilus LMD-9

75.19

100

0.753