Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U66_RS03220 Genome accession   NZ_CP145864
Coordinates   616183..618153 (+) Length   656 a.a.
NCBI ID   WP_048673701.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 611183..623153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS03195 (V6U66_03195) - 611901..612476 (-) 576 WP_002886838.1 CYTH domain-containing protein -
  V6U66_RS03200 (V6U66_03200) - 612572..613246 (+) 675 WP_014634828.1 GTP pyrophosphokinase family protein -
  V6U66_RS03205 (V6U66_03205) - 613218..614054 (+) 837 WP_060972658.1 NAD kinase -
  V6U66_RS03210 (V6U66_03210) - 614051..614947 (+) 897 WP_060972659.1 RluA family pseudouridine synthase -
  V6U66_RS03215 (V6U66_03215) pta 614963..615946 (+) 984 WP_410534574.1 phosphate acetyltransferase -
  V6U66_RS03220 (V6U66_03220) amiA 616183..618153 (+) 1971 WP_048673701.1 peptide ABC transporter substrate-binding protein Regulator
  V6U66_RS03225 (V6U66_03225) amiA 618334..620304 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  V6U66_RS03230 (V6U66_03230) amiC 620365..621858 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V6U66_RS03235 (V6U66_03235) amiD 621858..622784 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71943.67 Da        Isoelectric Point: 4.8199

>NTDB_id=940570 V6U66_RS03220 WP_048673701.1 616183..618153(+) (amiA) [Streptococcus salivarius strain KSS7]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFILKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYASVEKNYKDNIYYTAPGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKETLQADGVQFPIHLDLPVDQSSKINVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDIQN
ATLNAANAAAEDWDISNGVIWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940570 V6U66_RS03220 WP_048673701.1 616183..618153(+) (amiA) [Streptococcus salivarius strain KSS7]
ATGAAAAAAAGCAAATGGTTAGCCCTCGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGACCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACTAAGACAGCTGTGACAAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAGTTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGTCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCGGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCATTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGTTCTAACTATGCTTCAGTTGAGAAAAACTATAAAGATAATATTTATT
ACACAGCACCAGGTGCATCTACATCGGCTATTGGTGTGAATATTGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTAAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGAAACTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAAGTTCTAAAATCAATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAGCAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTATCATCTGATGACATACAAAAT
GCAACCCTTAACGCGGCTAATGCAGCGGCAGAAGACTGGGATATTTCAAACGGTGTCATTTGGGGTCCAGACTATCAAGA
CCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGGTATGATGATCCAAACA
ATGCTGCCGCAGCTCAAGTAGGTCTTAAAGATTATGACGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATGCAGGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

99.238

100

0.992
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904