Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V6U66_RS03230 Genome accession   NZ_CP145864
Coordinates   620365..621858 (+) Length   497 a.a.
NCBI ID   WP_014632819.1    Uniprot ID   A0A1W5ZDT1
Organism   Streptococcus salivarius strain KSS7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 615365..626858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS03220 (V6U66_03220) amiA 616183..618153 (+) 1971 WP_048673701.1 peptide ABC transporter substrate-binding protein Regulator
  V6U66_RS03225 (V6U66_03225) amiA 618334..620304 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  V6U66_RS03230 (V6U66_03230) amiC 620365..621858 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V6U66_RS03235 (V6U66_03235) amiD 621858..622784 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U66_RS03240 (V6U66_03240) amiE 622794..623879 (+) 1086 WP_037601740.1 ABC transporter ATP-binding protein Regulator
  V6U66_RS03245 (V6U66_03245) amiF 623872..624801 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  V6U66_RS03250 (V6U66_03250) - 624852..625637 (-) 786 WP_041826692.1 hypothetical protein -
  V6U66_RS03255 (V6U66_03255) - 625649..626347 (-) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U66_RS03260 (V6U66_03260) - 626352..626729 (-) 378 WP_002884206.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55883.67 Da        Isoelectric Point: 10.0050

>NTDB_id=940572 V6U66_RS03230 WP_014632819.1 620365..621858(+) (amiC) [Streptococcus salivarius strain KSS7]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKESKQFYATRDVPVLERVFGFYKHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=940572 V6U66_RS03230 WP_014632819.1 620365..621858(+) (amiC) [Streptococcus salivarius strain KSS7]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCCGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGGAAAGTAAGCAATTCTATGCGACACGTGATGTGCCTGTACTTGAACGTGTGTTTG
GCTTCTATAAGCACCTCTTTGAATTTGACAATACGGGATGGGTGAAAGATAAAACAAATCCAAACTTGAAACGATACATT
CGAATTGAAAATGATCCAGCTATTGGTTGGTCAGTGGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTCGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGTCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACGCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATTACAGGGGCAACTTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCTCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W5ZDT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.39

100

0.984
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974