Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V6U66_RS03245 Genome accession   NZ_CP145864
Coordinates   623872..624801 (+) Length   309 a.a.
NCBI ID   WP_014634820.1    Uniprot ID   A0AAP3Q635
Organism   Streptococcus salivarius strain KSS7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 618872..629801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS03230 (V6U66_03230) amiC 620365..621858 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V6U66_RS03235 (V6U66_03235) amiD 621858..622784 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U66_RS03240 (V6U66_03240) amiE 622794..623879 (+) 1086 WP_037601740.1 ABC transporter ATP-binding protein Regulator
  V6U66_RS03245 (V6U66_03245) amiF 623872..624801 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  V6U66_RS03250 (V6U66_03250) - 624852..625637 (-) 786 WP_041826692.1 hypothetical protein -
  V6U66_RS03255 (V6U66_03255) - 625649..626347 (-) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U66_RS03260 (V6U66_03260) - 626352..626729 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U66_RS03265 (V6U66_03265) - 626911..627705 (+) 795 WP_118058082.1 HAD-IIB family hydrolase -
  V6U66_RS03270 (V6U66_03270) - 627698..628516 (+) 819 WP_410534575.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35020.08 Da        Isoelectric Point: 6.5822

>NTDB_id=940575 V6U66_RS03245 WP_014634820.1 623872..624801(+) (amiF) [Streptococcus salivarius strain KSS7]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQILNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=940575 V6U66_RS03245 WP_014634820.1 623872..624801(+) (amiF) [Streptococcus salivarius strain KSS7]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGAGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAATTTTGAACCTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATTGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977