Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6U66_RS03235 Genome accession   NZ_CP145864
Coordinates   621858..622784 (+) Length   308 a.a.
NCBI ID   WP_022496729.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 616858..627784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS03225 (V6U66_03225) amiA 618334..620304 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  V6U66_RS03230 (V6U66_03230) amiC 620365..621858 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  V6U66_RS03235 (V6U66_03235) amiD 621858..622784 (+) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U66_RS03240 (V6U66_03240) amiE 622794..623879 (+) 1086 WP_037601740.1 ABC transporter ATP-binding protein Regulator
  V6U66_RS03245 (V6U66_03245) amiF 623872..624801 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  V6U66_RS03250 (V6U66_03250) - 624852..625637 (-) 786 WP_041826692.1 hypothetical protein -
  V6U66_RS03255 (V6U66_03255) - 625649..626347 (-) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U66_RS03260 (V6U66_03260) - 626352..626729 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U66_RS03265 (V6U66_03265) - 626911..627705 (+) 795 WP_118058082.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34637.76 Da        Isoelectric Point: 9.7054

>NTDB_id=940573 V6U66_RS03235 WP_022496729.1 621858..622784(+) (amiD) [Streptococcus salivarius strain KSS7]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFINVVIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=940573 V6U66_RS03235 WP_022496729.1 621858..622784(+) (amiD) [Streptococcus salivarius strain KSS7]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTTAATGACGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCATTAACGTTGTTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTTGATATGATTATGATGGAGATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCAGGTTTCTGGAACATGATTTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTACCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.351

100

0.994
  amiD Streptococcus thermophilus LMG 18311

95.779

100

0.958
  amiD Streptococcus thermophilus LMD-9

95.779

100

0.958