Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6U65_RS00350 Genome accession   NZ_CP145863
Coordinates   57341..58609 (+) Length   422 a.a.
NCBI ID   WP_048790895.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52341..63609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS00320 (V6U65_00320) - 52671..53108 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  V6U65_RS00325 (V6U65_00325) - 53287..53592 (+) 306 WP_037603797.1 hypothetical protein -
  V6U65_RS00330 (V6U65_00330) mutL 53644..55581 (+) 1938 WP_037603795.1 DNA mismatch repair endonuclease MutL -
  V6U65_RS00335 (V6U65_00335) - 55712..55933 (+) 222 WP_002886321.1 hypothetical protein -
  V6U65_RS00340 (V6U65_00340) ruvA 56091..56681 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA -
  V6U65_RS00345 (V6U65_00345) - 56690..57244 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  V6U65_RS00350 (V6U65_00350) cinA 57341..58609 (+) 1269 WP_048790895.1 competence/damage-inducible protein A Machinery gene
  V6U65_RS00355 (V6U65_00355) recA 58645..59784 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  V6U65_RS00360 (V6U65_00360) spx 59951..60349 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45718.90 Da        Isoelectric Point: 5.0777

>NTDB_id=940482 V6U65_RS00350 WP_048790895.1 57341..58609(+) (cinA) [Streptococcus salivarius strain KSS6]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNESRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTVLKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKNHGKTITAAESLTAGLFQASIADFSGVSQVFKGGFVTYSIEEKSKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDMI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=940482 V6U65_RS00350 WP_048790895.1 57341..58609(+) (cinA) [Streptococcus salivarius strain KSS6]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAGATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGACAATGAAAGCCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACC
CTGGCTAAATTTTTAGGAAAAGAACTCGTTTTTGATGAGGAGGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGGGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTCGGCGTTGG
AGAAAGTCAATTAGTGACTGTTCTTAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACGAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCGACTAAAACTCTAGATGGCAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGAACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGTCTCACAAGTGTTTAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACATGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.418

99.289

0.749
  cinA Streptococcus mitis NCTC 12261

74.702

99.289

0.742
  cinA Streptococcus pneumoniae TIGR4

74.463

99.289

0.739
  cinA Streptococcus pneumoniae Rx1

74.224

99.289

0.737
  cinA Streptococcus pneumoniae R6

74.224

99.289

0.737
  cinA Streptococcus pneumoniae D39

73.986

99.289

0.735
  cinA Streptococcus mutans UA159

71.463

98.815

0.706
  cinA Streptococcus suis isolate S10

55.529

98.578

0.547
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

99.763

0.448