Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6D45_RS09025 Genome accession   NZ_CP145722
Coordinates   1766006..1767256 (+) Length   416 a.a.
NCBI ID   WP_079287757.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1761006..1772256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS08995 (V6D45_09000) - 1761097..1762383 (+) 1287 WP_268393947.1 pitrilysin family protein -
  V6D45_RS09000 (V6D45_09005) efpI 1762437..1763165 (+) 729 WP_061187488.1 EF-P-5 aminopentanone reductase -
  V6D45_RS09005 (V6D45_09010) - 1763246..1763503 (+) 258 WP_003220996.1 DUF3243 domain-containing protein -
  V6D45_RS09010 (V6D45_09015) - 1763633..1764424 (+) 792 WP_003220998.1 YmfK family protein -
  V6D45_RS09015 (V6D45_09020) rodZ 1764491..1765357 (+) 867 WP_268393948.1 cell shape determination protein RodZ -
  V6D45_RS09020 (V6D45_09025) pgsA 1765407..1765988 (+) 582 WP_014113836.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6D45_RS09025 (V6D45_09030) cinA 1766006..1767256 (+) 1251 WP_079287757.1 competence/damage-inducible protein A Machinery gene
  V6D45_RS09030 (V6D45_09035) recA 1767429..1768475 (+) 1047 WP_014113838.1 recombinase RecA Machinery gene
  V6D45_RS09035 (V6D45_09040) - 1768644..1769819 (+) 1176 WP_338444359.1 serine hydrolase domain-containing protein -
  V6D45_RS09040 (V6D45_09045) rny 1770095..1771657 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45589.94 Da        Isoelectric Point: 5.3834

>NTDB_id=939675 V6D45_RS09025 WP_079287757.1 1766006..1767256(+) (cinA) [Bacillus spizizenii strain kcgeb_S11]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKSITISAAESFTGGLFSEWLTDLSGASKRFAGGVVCYTNDMKQNVLG
VKKETLDQFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=939675 V6D45_RS09025 WP_079287757.1 1766006..1767256(+) (cinA) [Bacillus spizizenii strain kcgeb_S11]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTATTGCTTGGCCAGATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCAGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGCGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGGACGATGTCACCTAATAATCGAAAACAGGCGCTTGTAATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCACCGGGAATGCTCACAGAACATGAATCGCGCTTTTATATGCTTCTTCCTGGACCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTATCAACCGTTCT
TCGCTTTTTCGGTATTGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCGGCAGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAAGCATTACGATTTCCGCGGCGGAAAGTTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAACGATTTGCCGGCGGCGTCGTTTGCTATACAAACGACATGAAGCAGAATGTGCTTGGC
GTCAAGAAGGAAACATTAGATCAATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGTAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCAGCTAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGTGCCAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.837

100

0.978
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375