Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F95_RS09095 Genome accession   NZ_CP145032
Coordinates   1740479..1740964 (+) Length   161 a.a.
NCBI ID   WP_353105695.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Q_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735479..1745964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F95_RS09055 (V5F95_09065) - 1735551..1735937 (+) 387 Protein_1760 pilin -
  V5F95_RS09060 (V5F95_09070) - 1735978..1736328 (+) 351 Protein_1761 pilin -
  V5F95_RS09065 (V5F95_09075) - 1736369..1736719 (+) 351 Protein_1762 pilin -
  V5F95_RS09070 (V5F95_09080) pilE 1736776..1737084 (+) 309 WP_269460796.1 pilin Machinery gene
  V5F95_RS09075 (V5F95_09090) lpxC 1737751..1738674 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F95_RS09080 (V5F95_09095) - 1738803..1739255 (+) 453 Protein_1765 pilin -
  V5F95_RS09085 (V5F95_09100) - 1739221..1739547 (+) 327 Protein_1766 pilin -
  V5F95_RS09090 (V5F95_09105) - 1739965..1740108 (+) 144 WP_003691943.1 hypothetical protein -
  V5F95_RS09095 (V5F95_09110) pilE 1740479..1740964 (+) 486 WP_353105695.1 pilin Machinery gene
  V5F95_RS09100 (V5F95_09115) - 1740991..1741265 (+) 275 Protein_1769 pilin -
  V5F95_RS09105 (V5F95_09120) - 1741308..1741490 (+) 183 Protein_1770 pilin -
  V5F95_RS09110 (V5F95_09125) - 1742027..1742818 (+) 792 WP_149032455.1 opacity family porin -
  V5F95_RS09115 (V5F95_09130) - 1742832..1743047 (+) 216 WP_172587022.1 hypothetical protein -
  V5F95_RS09120 (V5F95_09135) pilA 1743083..1744336 (-) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17242.82 Da        Isoelectric Point: 9.3470

>NTDB_id=936187 V5F95_RS09095 WP_353105695.1 1740479..1740964(+) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASPATDI
KGKYVKEVKVENGVVTAQMASTGVNKEIKGKKLSLWARREAGSVKWFCGQPVKRGDDAVTDANKIETKHLPSTCRDPFSA
S

Nucleotide


Download         Length: 486 bp        

>NTDB_id=936187 V5F95_RS09095 WP_353105695.1 1740479..1740964(+) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCGGCATACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCCCCGCCACCGACATC
AAAGGCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGA
AATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGC
GCGGCGACGACGCCGTCACCGACGCCAACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGACCCGTTCTCTGCT
AGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

82.209

100

0.832
  pilE Neisseria gonorrhoeae strain FA1090

81.212

100

0.832
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.106

100

0.41
  pilA/pilA1 Eikenella corrodens VA1

38.922

100

0.404
  pilA2 Legionella pneumophila strain ERS1305867

40.523

95.031

0.385
  comP Acinetobacter baylyi ADP1

36.747

100

0.379
  pilA2 Legionella pneumophila str. Paris

39.869

95.031

0.379