Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F95_RS09070 Genome accession   NZ_CP145032
Coordinates   1736776..1737084 (+) Length   102 a.a.
NCBI ID   WP_269460796.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Q_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731776..1742084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F95_RS09035 (V5F95_09045) - 1732948..1733568 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  V5F95_RS09040 (V5F95_09050) - 1733767..1734143 (-) 377 Protein_1757 transposase -
  V5F95_RS09045 (V5F95_09055) - 1734452..1734577 (-) 126 Protein_1758 IS110 family transposase -
  V5F95_RS09050 (V5F95_09060) - 1734801..1735433 (+) 633 WP_269460797.1 pilin -
  V5F95_RS09055 (V5F95_09065) - 1735551..1735937 (+) 387 Protein_1760 pilin -
  V5F95_RS09060 (V5F95_09070) - 1735978..1736328 (+) 351 Protein_1761 pilin -
  V5F95_RS09065 (V5F95_09075) - 1736369..1736719 (+) 351 Protein_1762 pilin -
  V5F95_RS09070 (V5F95_09080) pilE 1736776..1737084 (+) 309 WP_269460796.1 pilin Machinery gene
  V5F95_RS09075 (V5F95_09090) lpxC 1737751..1738674 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F95_RS09080 (V5F95_09095) - 1738803..1739255 (+) 453 Protein_1765 pilin -
  V5F95_RS09085 (V5F95_09100) - 1739221..1739547 (+) 327 Protein_1766 pilin -
  V5F95_RS09090 (V5F95_09105) - 1739965..1740108 (+) 144 WP_003691943.1 hypothetical protein -
  V5F95_RS09095 (V5F95_09110) pilE 1740479..1740964 (+) 486 WP_353105695.1 pilin Machinery gene
  V5F95_RS09100 (V5F95_09115) - 1740991..1741265 (+) 275 Protein_1769 pilin -
  V5F95_RS09105 (V5F95_09120) - 1741308..1741490 (+) 183 Protein_1770 pilin -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10944.34 Da        Isoelectric Point: 9.1386

>NTDB_id=936186 V5F95_RS09070 WP_269460796.1 1736776..1737084(+) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
MASASKIIGKYVKQVEVKNGVVTAQMASTGVNKEIQDKKLSLWAKREDGSVKWFCGQPVTRTEANAKAGTDDVAKADTTG
KDKEIDTKHLPSTCRDESSAGT

Nucleotide


Download         Length: 309 bp        

>NTDB_id=936186 V5F95_RS09070 WP_269460796.1 1736776..1737084(+) (pilE) [Neisseria gonorrhoeae strain WHO_Q_2024]
GTGGCATCCGCTTCAAAAATCATAGGCAAATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCCAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCACCGAAGCCAACGCCAAAGCCGGCACCGACGACGTCGCCAAAGCCGACACCACCGGC
AAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75

98.039

0.735
  pilE Neisseria gonorrhoeae MS11

70.213

92.157

0.647