Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V4S29_RS00745 Genome accession   NZ_CP144498
Coordinates   140445..141698 (+) Length   417 a.a.
NCBI ID   WP_347906329.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 66     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 135445..146698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S29_RS00725 (V4S29_00730) - 136834..137559 (+) 726 WP_347906327.1 ABC transporter ATP-binding protein -
  V4S29_RS00730 (V4S29_00735) - 137556..138632 (+) 1077 WP_208922120.1 ABC transporter permease -
  V4S29_RS00735 (V4S29_00740) - 138752..139690 (+) 939 WP_347906328.1 RodZ domain-containing protein -
  V4S29_RS00740 (V4S29_00745) pgsA 139801..140379 (+) 579 WP_087402358.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V4S29_RS00745 (V4S29_00750) cinA 140445..141698 (+) 1254 WP_347906329.1 competence/damage-inducible protein A Machinery gene
  V4S29_RS00750 (V4S29_00755) recA 141816..142871 (+) 1056 WP_087663259.1 recombinase RecA Machinery gene
  V4S29_RS00755 (V4S29_00760) rny 143089..144648 (+) 1560 WP_047341283.1 ribonuclease Y -
  V4S29_RS00760 (V4S29_00765) - 144865..145086 (+) 222 WP_087402276.1 helix-turn-helix transcriptional regulator -
  V4S29_RS00765 (V4S29_00770) - 145073..145315 (+) 243 WP_235426210.1 hypothetical protein -
  V4S29_RS00770 (V4S29_00775) - 145343..145606 (+) 264 WP_235426209.1 hypothetical protein -
  V4S29_RS00775 (V4S29_00780) - 145628..145834 (+) 207 Protein_154 DUF3169 family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45753.14 Da        Isoelectric Point: 4.9283

>NTDB_id=934096 V4S29_RS00745 WP_347906329.1 140445..141698(+) (cinA) [Enterococcus cecorum strain 66]
MNAEIIAVGTEILMGQIVNSNAAYLSEQLANFGINVYYHVAVGDNEKRLTACLERAKSRSDLIVLCGGLGPTQDDLTKQT
VAKFVNQALVYDPTGHARLMDYFAKTKREMTENNLLQALTFKDGRGIANPNGLAVGIYYEDSDHTHYLLLPGPPRELKAM
FCQNVVPLLREINPQDTKLYSRVLRFYGIGESQLVTLLADFIDHQTNPTIAPYAKTNEVTLRLTANASTQDQADRLLDEL
EEKIQALAGAYFYGYGDDFSLAEAMIAQLKEKKRTISVAESLTAGLFASTLGQYPGVSQVFKGGVVTYSLEMKAALLDID
ADYLREVGTVSEACVTLMAKNMQQKAQTDYAIAFSGVAGPDQLEGQAVGTVWMALATPNGVQTYCKQFPHGRNEIRQAAV
MFGLNLVYRALLAEEQA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=934096 V4S29_RS00745 WP_347906329.1 140445..141698(+) (cinA) [Enterococcus cecorum strain 66]
ATGAATGCAGAAATCATTGCAGTCGGAACAGAGATTTTGATGGGGCAAATCGTTAATTCCAATGCGGCCTATCTTTCAGA
GCAATTAGCCAATTTTGGGATTAATGTTTATTATCATGTCGCAGTTGGAGATAATGAAAAGCGATTGACGGCCTGTCTTG
AACGTGCCAAAAGTCGGAGTGATTTAATCGTGCTTTGTGGTGGTTTGGGGCCAACGCAAGATGATTTAACCAAGCAAACC
GTAGCCAAATTTGTCAATCAAGCATTAGTCTATGATCCAACAGGGCATGCACGTTTGATGGATTATTTTGCCAAGACCAA
GCGAGAAATGACCGAAAATAATTTATTACAAGCCCTCACTTTTAAAGATGGTCGGGGTATTGCCAATCCAAATGGTCTAG
CGGTCGGTATTTATTATGAAGATAGCGATCATACTCACTATTTATTATTGCCTGGACCACCGCGCGAGTTAAAGGCGATG
TTTTGTCAAAATGTTGTGCCACTTTTGCGTGAAATCAATCCGCAAGATACGAAGCTTTATTCTCGGGTGTTGCGTTTTTA
TGGGATTGGCGAATCGCAGTTAGTCACGCTTTTAGCAGATTTCATTGACCATCAGACTAACCCAACGATCGCGCCTTATG
CCAAAACCAATGAAGTGACGTTGCGTTTGACAGCCAATGCATCTACCCAAGATCAAGCGGATAGGTTGCTTGATGAATTA
GAGGAGAAAATTCAAGCTTTGGCCGGTGCTTACTTTTATGGTTATGGGGATGATTTTTCTTTAGCGGAGGCGATGATTGC
CCAATTAAAAGAGAAAAAACGGACAATCAGTGTGGCTGAGAGTTTGACAGCCGGCCTTTTTGCTTCTACCTTGGGACAAT
ATCCGGGGGTGTCACAGGTCTTTAAAGGTGGTGTGGTCACTTATTCGCTTGAGATGAAGGCGGCTTTATTAGATATTGAT
GCCGATTATTTACGAGAAGTCGGGACGGTGAGTGAAGCTTGTGTCACCTTAATGGCTAAAAATATGCAGCAAAAAGCACA
AACGGATTATGCCATTGCTTTTAGTGGCGTGGCGGGACCTGATCAATTAGAAGGCCAAGCAGTCGGAACTGTCTGGATGG
CTTTGGCGACACCAAATGGGGTACAGACTTATTGCAAACAGTTCCCCCATGGCCGCAATGAAATCCGCCAAGCAGCTGTC
ATGTTTGGGTTAAATCTCGTTTATCGCGCGCTTTTAGCTGAAGAACAAGCCTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

51.3

100

0.52
  cinA Streptococcus pneumoniae Rx1

51.064

100

0.518
  cinA Streptococcus pneumoniae R6

51.064

100

0.518
  cinA Streptococcus mutans UA159

51.069

100

0.516
  cinA Streptococcus pneumoniae D39

50.827

100

0.516
  cinA Streptococcus mitis SK321

50.591

100

0.513
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.506
  cinA Bacillus subtilis subsp. subtilis str. 168

44.878

98.321

0.441
  cinA Streptococcus suis isolate S10

47.273

92.326

0.436