Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V4S36_RS07750 Genome accession   NZ_CP144490
Coordinates   1515673..1516152 (-) Length   159 a.a.
NCBI ID   WP_243171714.1    Uniprot ID   -
Organism   Enterococcus cecorum strain 127     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1510673..1521152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S36_RS07725 (V4S36_07725) - 1512412..1513788 (-) 1377 WP_347943468.1 ISLre2 family transposase -
  V4S36_RS07730 (V4S36_07730) - 1513812..1514108 (-) 297 WP_243171954.1 hypothetical protein -
  V4S36_RS07735 (V4S36_07735) - 1514155..1514949 (-) 795 WP_347943469.1 ParA family protein -
  V4S36_RS07740 (V4S36_07740) - 1514967..1515113 (-) 147 WP_243171717.1 hypothetical protein -
  V4S36_RS07745 (V4S36_07745) - 1515278..1515550 (-) 273 WP_243171715.1 hypothetical protein -
  V4S36_RS07750 (V4S36_07750) ssb 1515673..1516152 (-) 480 WP_243171714.1 single-stranded DNA-binding protein Machinery gene
  V4S36_RS07755 (V4S36_07755) - 1516215..1516445 (-) 231 WP_347943470.1 hypothetical protein -
  V4S36_RS07760 (V4S36_07760) - 1516459..1516749 (-) 291 WP_347943472.1 hypothetical protein -
  V4S36_RS07765 (V4S36_07765) - 1516942..1517268 (+) 327 WP_243172145.1 hypothetical protein -
  V4S36_RS07770 (V4S36_07770) - 1517593..1517727 (+) 135 WP_341482413.1 putative holin-like toxin -
  V4S36_RS07775 (V4S36_07775) - 1518030..1520189 (-) 2160 WP_347943473.1 relaxase/mobilization nuclease domain-containing protein -
  V4S36_RS07780 (V4S36_07780) mobC 1520189..1520503 (-) 315 WP_347943474.1 plasmid mobilization relaxosome protein MobC -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18039.07 Da        Isoelectric Point: 4.9730

>NTDB_id=934032 V4S36_RS07750 WP_243171714.1 1515673..1516152(-) (ssb) [Enterococcus cecorum strain 127]
MINNVVLVGRLTKDCDLRYTSSGIAVATFNLAVNRNFTGQNGERETDFISCVVWRKPAETIANYTKKGSLIAVDGRLQTR
NYENQQGQRVYVTEVIVENFQFLESKAAMENRQQNSVQTPNQQTTPQYGQNGFARPDREMPEYPFGGKDVEGLENDFPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=934032 V4S36_RS07750 WP_243171714.1 1515673..1516152(-) (ssb) [Enterococcus cecorum strain 127]
ATGATTAACAATGTAGTATTAGTAGGAAGATTAACTAAAGATTGCGATTTGCGATACACTTCATCAGGTATCGCAGTTGC
TACCTTTAACTTAGCAGTCAATCGTAACTTTACAGGACAAAATGGAGAAAGAGAAACAGATTTTATTAGCTGCGTAGTAT
GGAGAAAACCAGCGGAAACAATCGCTAATTATACTAAAAAAGGGAGCTTGATTGCTGTAGATGGTCGATTACAAACGAGA
AATTATGAAAACCAGCAAGGACAACGTGTATATGTAACTGAAGTGATTGTCGAAAACTTCCAATTTTTAGAATCAAAAGC
AGCAATGGAAAATAGACAACAAAATTCTGTTCAAACACCTAATCAGCAAACTACCCCTCAGTATGGTCAGAATGGATTTG
CTCGTCCAGATCGTGAAATGCCAGAATATCCGTTTGGAGGGAAAGATGTTGAAGGATTGGAGAATGATTTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.61
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.585

66.667

0.491
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

66.667

0.384
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.847

74.214

0.377
  ssbB/cilA Streptococcus mitis NCTC 12261

50

74.214

0.371
  ssbB/cilA Streptococcus pneumoniae Rx1

50

74.214

0.371
  ssbB/cilA Streptococcus pneumoniae D39

50

74.214

0.371
  ssbB/cilA Streptococcus pneumoniae R6

50

74.214

0.371
  ssbB/cilA Streptococcus mitis SK321

50

74.214

0.371