Detailed information NTG0933963

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: VZ068_RS16075
• Genome accession: NZ_CP144460
• Coordinates: 3835726..3836928 (+)
• Length: 400 a.a.
• NCBI ID: WP_349657730.1
• Uniprot ID: -
• Organism: Xanthomonas sp. 10-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3830726..3841928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZ068_RS16055 (VZ068_16060)	-	3831542..3832336 (-)	795	WP_259162353.1	glycosyltransferase	-
VZ068_RS16060 (VZ068_16065)	-	3832341..3832646 (-)	306	WP_349655858.1	SMR family transporter	-
VZ068_RS16065 (VZ068_16070)	-	3833066..3833482 (+)	417	WP_349655859.1	pilin	-
VZ068_RS16070 (VZ068_16075)	-	3833654..3835543 (+)	1890	WP_349655860.1	hypothetical protein	-
VZ068_RS16075 (VZ068_16080)	pilC	3835726..3836928 (+)	1203	WP_349657730.1	type II secretion system F family protein	Machinery gene
VZ068_RS16080 (VZ068_16085)	-	3836935..3837798 (+)	864	WP_002812278.1	A24 family peptidase	-
VZ068_RS16085 (VZ068_16090)	coaE	3837812..3838453 (+)	642	WP_259162376.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 43750.09 Da
• Isoelectric Point: 10.0366

>NTDB_id=933963 VZ068_RS16075 WP_349657730.1 3835726..3836928(+) (pilC) [Xanthomonas sp. 10-10]
MATFVWEGTDKRGVKMKGDELARNANMLRAELRRRGITPTVVKTKPKPLFGAAGKPIKPKDIAFFSRQMATMMKSGVPIV
GSLEIIGEGAKNPRMKKMVGEIRTDIEGGLSLNEAISKHPVQFDELYRNLVKAGESAGVLDTVLETVATYKENIEALKGK
IKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNCSRFMVSWWLPMLLIAIGSVVGLVMGYKRS
PKMQHLFDRLILKVPVIGKIMHDSAIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNLSM
KQVNLFPHMVIQMTAIGEEAGALDTMLFKVADYFEQDVNNAVDALSSLLEPMIMIFIGVVVGGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=933963 VZ068_RS16075 WP_349657730.1 3835726..3836928(+) (pilC) [Xanthomonas sp. 10-10]
ATGGCAACCTTTGTCTGGGAGGGGACAGACAAGCGCGGCGTCAAGATGAAGGGGGATGAGCTCGCCCGCAATGCCAACAT
GCTGCGTGCCGAACTTCGGCGGCGCGGCATCACGCCGACTGTGGTCAAGACCAAGCCCAAGCCGCTGTTCGGCGCCGCCG
GCAAGCCTATCAAGCCCAAGGACATCGCGTTCTTCAGTCGGCAGATGGCGACCATGATGAAATCGGGCGTGCCGATTGTG
GGATCGCTCGAAATCATCGGCGAGGGCGCCAAGAACCCGCGCATGAAGAAGATGGTCGGCGAAATCCGCACCGACATCGA
GGGCGGCCTGTCGCTCAACGAGGCCATCAGCAAGCATCCGGTGCAATTCGACGAGCTGTACCGCAACCTGGTCAAAGCGG
GCGAAAGTGCCGGCGTTCTCGATACTGTGCTGGAAACGGTGGCGACATATAAGGAAAACATCGAAGCCCTGAAGGGCAAG
ATCAAGAAGGCGCTGTTCTATCCGGCGATGGTGATGGCCGTTGCGCTGATCGTCAGTTCCATCCTACTCATCTGGGTTGT
ACCGCAATTCGAAACCGTCTTCTCCAGCTTTGGCGCGGAGTTGCCGGCGTTTACCCAGATGATCGTGAATTGTTCACGTT
TCATGGTGTCGTGGTGGCTGCCGATGTTGCTGATCGCAATCGGCTCGGTCGTCGGGCTAGTGATGGGCTACAAGCGCTCG
CCGAAAATGCAGCATCTGTTCGACCGGCTGATCTTGAAGGTGCCGGTCATCGGCAAGATCATGCACGACAGTGCCATTGC
CCGGTTCGCGCGTACCACGGCGGTGACCTTCAAGGCTGGTGTTCCGTTGGTGGAGGCGCTGAGCATCGTGGCCGGCGCCA
CCGGCAACAAGGTCTACGAAGAAGCGGTGCTGCGCATGCGCGACGACGTGTCGGTCGGCTACCCGGTCAACCTGTCGATG
AAGCAGGTCAACCTGTTTCCGCATATGGTGATCCAGATGACCGCCATCGGCGAAGAGGCCGGCGCATTGGATACCATGCT
GTTCAAAGTGGCCGATTACTTCGAGCAGGACGTGAACAATGCGGTAGATGCCTTGAGCAGCCTGCTGGAGCCGATGATCA
TGATCTTCATCGGTGTCGTTGTCGGCGGTATGGTGATCGGCATGTATCTGCCCATCTTCAAGTTGGGCGCAGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	52.764	99.5	0.525
pilC	Legionella pneumophila strain ERS1305867	52.513	99.5	0.523
pilC	Acinetobacter baylyi ADP1	49	100	0.49
pilC	Acinetobacter baumannii D1279779	48.5	100	0.485
pilG	Neisseria gonorrhoeae MS11	42.928	100	0.432
pilG	Neisseria meningitidis 44/76-A	42.928	100	0.432
pilC	Vibrio campbellii strain DS40M4	40.05	100	0.403
pilC	Vibrio cholerae strain A1552	39.5	100	0.395
pilC	Thermus thermophilus HB27	38.653	100	0.387