Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V3829_RS11735 Genome accession   NZ_CP144358
Coordinates   2380066..2381316 (-) Length   416 a.a.
NCBI ID   WP_003154146.1    Uniprot ID   A0A6A8LFP8
Organism   Bacillus velezensis strain DJ4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2375066..2386316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS11720 rny 2375650..2377209 (-) 1560 WP_003154140.1 ribonuclease Y -
  V3829_RS11725 - 2377502..2378683 (-) 1182 WP_003154142.1 serine hydrolase domain-containing protein -
  V3829_RS11730 recA 2378852..2379895 (-) 1044 WP_003154145.1 recombinase RecA Machinery gene
  V3829_RS11735 cinA 2380066..2381316 (-) 1251 WP_003154146.1 competence/damage-inducible protein A Machinery gene
  V3829_RS11740 pgsA 2381334..2381915 (-) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V3829_RS11745 - 2381990..2382889 (-) 900 WP_014305022.1 helix-turn-helix domain-containing protein -
  V3829_RS11750 - 2382908..2383699 (-) 792 WP_003154149.1 DUF3388 domain-containing protein -
  V3829_RS11755 - 2383827..2384084 (-) 258 WP_003154150.1 DUF3243 domain-containing protein -
  V3829_RS11760 ymfI 2384160..2384888 (-) 729 WP_014305021.1 elongation factor P 5-aminopentanone reductase -
  V3829_RS11765 yfmH 2384947..2386233 (-) 1287 WP_025851236.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45122.44 Da        Isoelectric Point: 5.3789

>NTDB_id=933734 V3829_RS11735 WP_003154146.1 2380066..2381316(-) (cinA) [Bacillus velezensis strain DJ4]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELASGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=933734 V3829_RS11735 WP_003154146.1 2380066..2381316(-) (cinA) [Bacillus velezensis strain DJ4]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGTCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGTATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAACCGCTGCTTCTTAAAAAGCTTGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGAGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCATCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTCGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LFP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385