Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ENLAB_RS09395 Genome accession   NZ_AP025635
Coordinates   2005966..2007204 (+) Length   412 a.a.
NCBI ID   WP_244350802.1    Uniprot ID   -
Organism   Enterococcus innesii strain DB-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000966..2012204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENLAB_RS09375 (ENLAB_18650) - 2001198..2002466 (+) 1269 WP_081117606.1 pitrilysin family protein -
  ENLAB_RS09380 (ENLAB_18660) - 2002459..2003757 (+) 1299 WP_005232896.1 pitrilysin family protein -
  ENLAB_RS09385 (ENLAB_18670) - 2004222..2005124 (+) 903 WP_200125744.1 helix-turn-helix domain-containing protein -
  ENLAB_RS09390 (ENLAB_18680) pgsA 2005257..2005838 (+) 582 WP_005232894.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ENLAB_RS09395 (ENLAB_18690) cinA 2005966..2007204 (+) 1239 WP_244350802.1 competence/damage-inducible protein A Machinery gene
  ENLAB_RS09400 (ENLAB_18700) recA 2007307..2008350 (+) 1044 WP_077453209.1 recombinase RecA Machinery gene
  ENLAB_RS09405 (ENLAB_18710) rny 2008594..2010168 (+) 1575 WP_005232891.1 ribonuclease Y -
  ENLAB_RS09410 (ENLAB_18720) treR 2010467..2011183 (-) 717 WP_005226457.1 trehalose operon repressor -
  ENLAB_RS09415 (ENLAB_18730) pgmB 2011238..2011888 (-) 651 WP_005232889.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44768.94 Da        Isoelectric Point: 4.6440

>NTDB_id=93354 ENLAB_RS09395 WP_244350802.1 2005966..2007204(+) (cinA) [Enterococcus innesii strain DB-1]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVELLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAGTKSKLLGIDP
ALLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASVKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=93354 ENLAB_RS09395 WP_244350802.1 2005966..2007204(+) (cinA) [Enterococcus innesii strain DB-1]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTAGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAGGAATTGCTGA
CGATCGCCGATAAACGCAGCGACTTGATCGTGCTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGCCATGTGGGACAGGAATTAGTGCGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGACAGACCCTCGTTTTTAAGGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCGGGACCGCCAAGTGAACTGCAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTCTTAGAGCAGTTTCCCCAAGAAGAAGTCTTGCTTTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCGTTGGTCACAGAATTGGCCGATTTGATCGAGAATCAGGTCAATCCCACCATTGCTCCTTATGCCA
AACCCAATGAGGTCACGTTGCGTCTGACGGTCAAAACCGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCATTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGATATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGAGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGGAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GCGCTTTTAGAAAGCTATGGGACTGTTAGTCAGGAATGTGCGGAAGCAATGGCCGTCTATGCCCGCAAACAAGCAGAGAC
CGATTATGCGGTGGCGTTTACTGGTGTTGCTGGTCCAGACGAACTAGAAGGCCAGCCCAAAGGCACTGTTTGGATCGCCT
TAGCTTCTGTCAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGTGCCTATATTCGGCATAGTGCTGTCATG
GCAGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.355

100

0.517
  cinA Streptococcus mitis SK321

50.355

100

0.517
  cinA Streptococcus pneumoniae D39

50.118

100

0.515
  cinA Streptococcus pneumoniae Rx1

50.118

100

0.515
  cinA Streptococcus pneumoniae R6

50.118

100

0.515
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.512
  cinA Streptococcus mutans UA159

50

100

0.505
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

42.512

100

0.427

Multiple sequence alignment