Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V3I11_RS07705 Genome accession   NZ_CP144280
Coordinates   1535714..1536163 (-) Length   149 a.a.
NCBI ID   WP_042593498.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1530714..1541163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS07685 (V3I11_07685) rho 1531104..1532366 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  V3I11_RS07690 (V3I11_07690) pilD 1532420..1533112 (-) 693 WP_014550482.1 prepilin peptidase Machinery gene
  V3I11_RS07695 (V3I11_07695) pilC 1533109..1534326 (-) 1218 WP_014550481.1 type II secretion system F family protein Machinery gene
  V3I11_RS07700 (V3I11_07700) pilB 1534323..1535717 (-) 1395 WP_011271972.1 GspE/PulE family protein Machinery gene
  V3I11_RS07705 (V3I11_07705) pilA 1535714..1536163 (-) 450 WP_042593498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V3I11_RS07710 (V3I11_07710) ampD 1536278..1536838 (+) 561 WP_042599472.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  V3I11_RS07715 (V3I11_07715) corC 1537451..1538350 (+) 900 WP_005656283.1 CNNM family magnesium/cobalt transport protein CorC -
  V3I11_RS07720 (V3I11_07720) lnt 1538373..1539902 (+) 1530 WP_079989936.1 apolipoprotein N-acyltransferase -
  V3I11_RS07725 (V3I11_07725) rsmE 1539952..1540689 (+) 738 WP_011271976.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15464.84 Da        Isoelectric Point: 8.7944

>NTDB_id=933308 V3I11_RS07705 WP_042593498.1 1535714..1536163(-) (pilA) [Haemophilus influenzae strain P3_EMO]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=933308 V3I11_RS07705 WP_042593498.1 1535714..1536163(-) (pilA) [Haemophilus influenzae strain P3_EMO]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

93.96

100

0.94
  pilA Haemophilus influenzae Rd KW20

88.591

100

0.886
  pilA Glaesserella parasuis strain SC1401

56.376

100

0.564
  pilA2 Legionella pneumophila str. Paris

39.189

99.329

0.389
  pilA2 Legionella pneumophila strain ERS1305867

39.189

99.329

0.389
  pilA Vibrio campbellii strain DS40M4

38.298

94.631

0.362