Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V3I11_RS07695 Genome accession   NZ_CP144280
Coordinates   1533109..1534326 (-) Length   405 a.a.
NCBI ID   WP_014550481.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528109..1539326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS07640 (V3I11_07640) - 1528119..1528325 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07645 (V3I11_07645) - 1528410..1528616 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07650 (V3I11_07650) - 1528701..1528907 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07655 (V3I11_07655) - 1528981..1529187 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07660 (V3I11_07660) - 1529273..1529479 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07665 (V3I11_07665) - 1529565..1529771 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07670 (V3I11_07670) - 1529856..1530062 (-) 207 WP_005666692.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07675 (V3I11_07675) cueR 1530139..1530525 (+) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  V3I11_RS07680 (V3I11_07680) metJ 1530539..1530856 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  V3I11_RS07685 (V3I11_07685) rho 1531104..1532366 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  V3I11_RS07690 (V3I11_07690) pilD 1532420..1533112 (-) 693 WP_014550482.1 prepilin peptidase Machinery gene
  V3I11_RS07695 (V3I11_07695) pilC 1533109..1534326 (-) 1218 WP_014550481.1 type II secretion system F family protein Machinery gene
  V3I11_RS07700 (V3I11_07700) pilB 1534323..1535717 (-) 1395 WP_011271972.1 GspE/PulE family protein Machinery gene
  V3I11_RS07705 (V3I11_07705) pilA 1535714..1536163 (-) 450 WP_042593498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V3I11_RS07710 (V3I11_07710) ampD 1536278..1536838 (+) 561 WP_042599472.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  V3I11_RS07715 (V3I11_07715) corC 1537451..1538350 (+) 900 WP_005656283.1 CNNM family magnesium/cobalt transport protein CorC -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 46089.34 Da        Isoelectric Point: 9.9010

>NTDB_id=933306 V3I11_RS07695 WP_014550481.1 1533109..1534326(-) (pilC) [Haemophilus influenzae strain P3_EMO]
MTKKLFYYQGSNALNQKQKGSIIADTKQQAHFQLISRGLTHIKLQQNWQFGAKPKNSEISELLNQLATLLQSVIPLKNSL
QILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQQGKYLTQQEIQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQK
IMLYPSMVLGISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQTWF
HQKKNQLISITPIFGTIQKLSRLVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGY
AFSDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVIIGSLIGIIMMGMYLPIFNM
GSVIQ

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=933306 V3I11_RS07695 WP_014550481.1 1533109..1534326(-) (pilC) [Haemophilus influenzae strain P3_EMO]
ATGACTAAAAAACTCTTTTATTATCAAGGTAGTAACGCATTAAATCAGAAACAAAAAGGCTCAATTATTGCGGATACGAA
ACAACAAGCGCACTTTCAGTTAATAAGCCGCGGGCTTACTCACATCAAATTACAACAAAACTGGCAATTTGGGGCAAAAC
CCAAAAATTCAGAAATCAGTGAATTACTCAATCAATTAGCGACATTGCTACAGTCCGTAATTCCGTTAAAAAACAGCCTA
CAAATTTTGCAACAAAATTGTACTCAAATTATGCTCAACAAATGGCTTGAACGACTGCTTCAATCCATTGAATCTGGCTT
AGCATTCTCACAAGCCATTGAACAACAAGGAAAATATCTCACACAACAAGAAATTCAACTGATTCAAGTGGGAGAAATGA
CAGGAAAACTTGCCGTAGTTTGTAAAAAAATAGCCACGCACCGTAGTCAATCTTTGGCTTTACAACGCAAATTACAGAAA
ATTATGTTATATCCCTCAATGGTATTGGGAATTTCTCTATTATTGACACTCGCATTACTGCTTTTTATCGTACCTCAATT
TGCTGAAATGTACAGTGGCAACAATGCCGAATTACCAACAATAACTGCAATATTGCTCTCTATATCCAATTTTCTTAAGC
AAAATATTGGCATTTTGCTATTTTTCGCTTTGAGTTTTGTTCTATTTTATTACTTTTATCTAAAACGCCAGACTTGGTTT
CATCAAAAGAAAAATCAACTTATTTCTATCACGCCTATTTTTGGCACAATTCAAAAACTTTCACGTTTAGTGAACTTTAG
TCACAGTTTACAAATTATGTTACAGGCTGGCGTACCGCTTAATCAAGCACTAGACAGTTTTCTCCCTCGCACACAAACGT
GGCAAACCAAGACGCTTGTAAATGACATCATATTAGATAAAGAAGTCCGGTCAATTTTACAATGGGTTTCTCAAGGCTAT
GCGTTTTCTGATAGTGTAAGTAGCGATCTTTTCCCGATGGAAGCACAACAAATGTTACAAATTGGCGAGCAAAGCGGAAA
ACTCGCTTTGATGCTAGAGCATATTGCGGATAATTACCAAGAAAAACTTAATCATCAAATTGACTTACTCTCACAAATGC
TAGAACCATTAATGATGGTAATTATCGGCAGTCTGATTGGAATTATTATGATGGGAATGTATTTACCTATCTTTAATATG
GGCTCTGTTATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(266-396)

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae 86-028NP

98.03

100

0.983
  pilC Haemophilus influenzae Rd KW20

96.798

100

0.97
  pilC Glaesserella parasuis strain SC1401

38.5

98.765

0.38