Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V3I11_RS07690 Genome accession   NZ_CP144280
Coordinates   1532420..1533112 (-) Length   230 a.a.
NCBI ID   WP_014550482.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527420..1538112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS07625 (V3I11_07625) - 1527549..1527755 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07635 (V3I11_07635) - 1527840..1528046 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07640 (V3I11_07640) - 1528119..1528325 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07645 (V3I11_07645) - 1528410..1528616 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07650 (V3I11_07650) - 1528701..1528907 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07655 (V3I11_07655) - 1528981..1529187 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07660 (V3I11_07660) - 1529273..1529479 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07665 (V3I11_07665) - 1529565..1529771 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07670 (V3I11_07670) - 1529856..1530062 (-) 207 WP_005666692.1 heavy-metal-associated domain-containing protein -
  V3I11_RS07675 (V3I11_07675) cueR 1530139..1530525 (+) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  V3I11_RS07680 (V3I11_07680) metJ 1530539..1530856 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  V3I11_RS07685 (V3I11_07685) rho 1531104..1532366 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  V3I11_RS07690 (V3I11_07690) pilD 1532420..1533112 (-) 693 WP_014550482.1 prepilin peptidase Machinery gene
  V3I11_RS07695 (V3I11_07695) pilC 1533109..1534326 (-) 1218 WP_014550481.1 type II secretion system F family protein Machinery gene
  V3I11_RS07700 (V3I11_07700) pilB 1534323..1535717 (-) 1395 WP_011271972.1 GspE/PulE family protein Machinery gene
  V3I11_RS07705 (V3I11_07705) pilA 1535714..1536163 (-) 450 WP_042593498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V3I11_RS07710 (V3I11_07710) ampD 1536278..1536838 (+) 561 WP_042599472.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26683.67 Da        Isoelectric Point: 8.5626

>NTDB_id=933305 V3I11_RS07690 WP_014550482.1 1532420..1533112(-) (pilD) [Haemophilus influenzae strain P3_EMO]
MIYFTMFLLGGILGIALWFYLSGFITRLQQEIYATYIELFPQNFLSFQPSVSSIQQKKCGHILRYFLNVGVEFIFLQIAF
KDSTFAIWLGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=933305 V3I11_RS07690 WP_014550482.1 1532420..1533112(-) (pilD) [Haemophilus influenzae strain P3_EMO]
ATGATTTACTTCACAATGTTTTTATTAGGCGGTATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTTCCACAAAACTTTCTGTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAATGTTGGGGTAGAATTTATATTTTTACAAATTGCCTTC
AAGGACTCTACTTTCGCTATATGGCTAGGGCTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGAGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

89.565

100

0.896
  pilD Haemophilus influenzae Rd KW20

89.13

100

0.891