Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACDW37_RS24520 Genome accession   NZ_CP167985
Coordinates   5241103..5241528 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 0502d1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5236103..5246528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW37_RS24505 (ACDW37_24505) pilX 5236673..5237260 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  ACDW37_RS24510 (ACDW37_24510) pilY1 5237272..5240757 (+) 3486 WP_023518093.1 type 4a pilus biogenesis protein PilY1 -
  ACDW37_RS24515 (ACDW37_24515) pilY2 5240759..5241106 (+) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  ACDW37_RS24520 (ACDW37_24520) comF 5241103..5241528 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ACDW37_RS24525 (ACDW37_24525) ispH 5241575..5242519 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACDW37_RS24530 (ACDW37_24530) fkpB 5242605..5243045 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ACDW37_RS24535 (ACDW37_24535) lspA 5243038..5243547 (-) 510 WP_003094728.1 signal peptidase II -
  ACDW37_RS24540 (ACDW37_24540) ileS 5243540..5246371 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=933305 ACDW37_RS24520 WP_003094721.1 5241103..5241528(+) (comF) [Pseudomonas aeruginosa strain 0502d1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=933305 ACDW37_RS24520 WP_003094721.1 5241103..5241528(+) (comF) [Pseudomonas aeruginosa strain 0502d1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383