Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V2176_RS07140 Genome accession   NZ_CP143963
Coordinates   1404556..1405806 (+) Length   416 a.a.
NCBI ID   WP_330938190.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2151     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1399556..1410806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2176_RS07115 (V2176_07115) ymfI 1400870..1401601 (+) 732 WP_009328491.1 elongation factor P 5-aminopentanone reductase -
  V2176_RS07120 (V2176_07120) - 1401672..1401929 (+) 258 WP_003181915.1 DUF3243 domain-containing protein -
  V2176_RS07125 (V2176_07125) - 1402177..1402968 (+) 792 WP_003181917.1 YmfK family protein -
  V2176_RS07130 (V2176_07130) - 1402986..1403888 (+) 903 WP_003181919.1 helix-turn-helix domain-containing protein -
  V2176_RS07135 (V2176_07135) pgsA 1403955..1404536 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V2176_RS07140 (V2176_07140) cinA 1404556..1405806 (+) 1251 WP_330938190.1 competence/damage-inducible protein A Machinery gene
  V2176_RS07145 (V2176_07145) recA 1405974..1407020 (+) 1047 WP_003181926.1 recombinase RecA Machinery gene
  V2176_RS07150 (V2176_07150) rny 1407361..1408920 (+) 1560 WP_003181928.1 ribonuclease Y -
  V2176_RS07155 (V2176_07155) - 1409007..1409804 (+) 798 WP_330938191.1 TIGR00282 family metallophosphoesterase -
  V2176_RS07160 (V2176_07160) spoVS 1410006..1410266 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45715.02 Da        Isoelectric Point: 5.0714

>NTDB_id=932273 V2176_RS07140 WP_330938190.1 1404556..1405806(+) (cinA) [Bacillus licheniformis strain FUA2151]
MKLERKAEIIAVGSELLLGQIVNTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSREKIVSRVLRFFGIGESQLETDLEDLINAQTNPTIAPLAADGEVTLRLTAKHADPEETNRLL
KETEDRILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VSEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=932273 V2176_RS07140 WP_330938190.1 1404556..1405806(+) (cinA) [Bacillus licheniformis strain FUA2151]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGCTCTGAGCTTCTGCTCGGACAAATCGTTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAATCCGGAGCGCCTTA
AACAAGTCATTCAGACAGCGCAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATCTG
ACAAAAGAAACGATCGCCGAAGTTGTCGGGCGCCCTCTTAAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTTGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAGGGAAAAGATCGTGTCAAGGGTGCT
GCGCTTCTTCGGCATCGGTGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCAATGCGCAGACTAATCCGACAATCG
CTCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTTACGGCAAAGCATGCGGATCCGGAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCGCATTTTGGAGCGGGTCGGAGAATTCTTTTACGGGTATGATGATACATCCCTCGCAGAAGAGCT
TGCGAAAGCATGCCGGAGCAAGGGTATGACTCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCCGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTTCGGAAGACACGCTGCAGCGCTATGGTGCGGTCAGCGCGCAATGCGCTAAAGAGCTCGCCGCAGGCATCAGAGTCAA
GACAGGAAGCGATATCGGCATCAGCTTCACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCTGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAGGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGGAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.202

100

0.762
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.478
  cinA Streptococcus mitis SK321

47.017

100

0.474
  cinA Streptococcus pneumoniae R6

47.017

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.474
  cinA Streptococcus mitis NCTC 12261

47.017

100

0.474
  cinA Streptococcus pneumoniae D39

46.778

100

0.471
  cinA Streptococcus mutans UA159

46.829

98.558

0.462
  cinA Streptococcus suis isolate S10

41.162

95.192

0.392